AMCG00002317 (plekhm2)


Basic Information

Item Value
gene id AMCG00002317
gene name plekhm2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11514000 ~ 11527918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002317
gttttgaaaCGCGTTATGCTCATCTTGAATGcccagctaaaaaaaaaaaaagctttgactTTCGATGTTAGGTCAACATTAATACCGTCAGTATTATTATAACACAGCGGTAGATATGAAAATGGACCTAGAGGCCGGGCAGTCTGTGCATCTGAGTTTTTATTTCATCCCCATCGTGTGCAGCCTGTTAAAGGACTACCGCAGAACCGAAGACGGGCGGCGAGAACAGTAACATAGCAACCCCCCTAAAAAAGCAGGCAGGAAAGCTCCGAAAAGAACGCAAGAAATAGAACCACACATTCTGGAATTCGCCCGGGTGAGTGACAGATTCCACGGCTCGTTTTGACAGCACTTGACCCGAGCAGCAGCAGCGACAACAACAAGCGTATTGTATCGCATGCTTTCTGTGCTGCTCGGCCGGAGACCGGGGGCGCAGATGAAAGAGTCCCAAGACGGCGTGACCTCGCAAAGAGTCAACACCAGAGACAGATAGAGAAGAGAGCCGGATAAACGGAAAGGAAAAGCGGCGTGGactgcctccctctcccccctcgTCTCTGACTGCGTCTGCCTCGCCGTCGGGACAGTGGACAGTCTGCGGCAGCCCCATCGATCTCACCGTAGGCGGGCCAGGAGACCTCCAGACATGGATCAACTGAAAGTCAAAGACCGCATCCTGGAGAACATCTCTCTCTCGGTCAAAAAGctCCAGAGTTACTTCGCCGCCTGCGAGGATGAGACGCCCGCCATCCGCAACCATGACCGGGTCCTGCAGCGCCTCTGTGAGCACCTGGACCACGCCCTGCTATATGGGCTGCAGGACATCTCCTCGGGGTACTGGGTGCTGGTGCTGCACTTTACGCGGCGCGAGGCAGTCAGACAGATCGAGGAGCTGCAGCACATCGCCACCAACCTGGGCCGCAGTCGGGCCTGGCTGTACCTGGCTCTGAGCGAGAGCTCTCTGGAGAGCTACCTGCGGCTGTTCCAGGAGAACCAGGGCCTGCTGCACAAGTACTACTTCAAGAACGCGCTGGTCTGCAGTGATGACCACCTTGCACTCTTCCTCACGCTGGTCTCTGGCCTGGAGTTCATCCGCTTTGACCTAGAGCTGAACTTGCTGGACTTTGAGGAGCGGCTGCCCAGCTCTGACAGCCTGTCCCTGCACTCCTTCACCTCCCTCACCTCCACCAACCTGGAGTGGGACGACAGCGCCATCGCCCCCTCCAGTGAGGATTATGATTTTGGTGATGTGTTCCCTGTCCTGCAGTCCATGCCCAGTGCAGACTGGGAAGAGGGTGACCTGACCGAGTCGATCAGTGCCCCGCACTCTGTGTCCTGCGATCCTCCCTCCAACAGGGCGGCGCCGCGGAGCCCCACGCTGCGGGTGAACCCATTTAATGAGGACTCGGACACCAACCCCTCCACAGACGCCACGCCCGTGCACTGCCCCCCCCGCCGCAGCCAGGGGGAGGGCGACGACACCGAGAGCACCGGCACAGAGCTCGAGGTCATCAGGCTGGCCCGGCGCCGGAAGGTGGGGAAGAAGAAGCGAGGGAAGGGAGGCTCTGTTAGCAGCTCCGACCGACCCAGCGCCCCGGAGAGGGAGGTGGCGGAGGGCACAGAGGGGCCCCCTTTGAAGATGGACGTCATGGACAGCGAGAGGCGCATGGCGGGAGGCGGGGAGAGGAGGCTGGAGGGGCAGGGGGTGGAGAAtgacgaggaggaggagcaggaggaggaggaggaggaggaagggggggagTGCGGCGAGGGCCTGCTACGTCTCCCCAAGATGACGGACACCTCGATGGACAGTGTGGGGCAGCCACTGCGGGATGTCATCGATCAGCTGGACTGCCAGGGCTGGGGGGCCGGGGCGGGGAGAGGGCGAGGGAGGGGGTCGGCGGCATCGGGGCAGCCCAGAACCTCTGAGCCCCCCcagccacccccaccccagcaGCAGCCCTTTCGGAATGAGGCCGGGGGAAAGCCGCCTGACCCCGCCCCCTCAcccctctcctgctctctggCCCAGGACTCCCACTACCTGCATGCCCCCCCGCCCTCAGACTTCTACCGCTTTACCGCAGAGAGTGCAGGCCCTGTTACCCCAGGTGGTGGCCACTATGACCCTGCAGGGCCTGGCCAGCCGGCGCATGTTTGCAGTGGCTatgagggtgagggagagagagaggcggcaCCGGGAACCACCCCCCAACCCCTAGACACCCGGGGAcaaggggaggaagaggaggaggaggaggaaggacaGAAGACGCCGGTGCAGAACGGCTCAGCCCTGCCCCCAGGCATGTCtccagaggaagaggaagaagaagatgagGAGAGGCTGCCCCCCACCAGCCCCTCGGAGACCAGCCACCAGTCAGAATTCAGGGTGGACAACAACCATCTCCTGCTACTGATGATCCATGTGTTCAGAGAGAACGAGGAACAGCTTTTCAAGATGGTCAAGATGAGCACAGGGCACATGGAGGGGAACCTGCAGCCACTGTACCTGCTGCTGACAGACTGCTACATCTACCTGCTGAGGAAAGgtgCTGCAGAGAAGCCCTACACTGTGGAGGAGGCAGTGTCCTACAACGAGCTGGACTACATCTCTgtGGGAATGGACCAACAGACTGTCATGCTGGTTTGCACTAACAGGCGCAGACAGTTCCTCCTGGACACAGCAGACCACTCCCTGACAGAgTGGTTCTTGTGCGCTCTGCAGTCTGCGATGGTAAAGGGGTGCAGGGAGCCGCCGTACCCGTCTGTGCTTACGGACGCCACCATGGAGAGACTGGCGCTCACCAAATTTGTGGCACAGGAGTCGCACTGTGAGgtgTCAGAGGTATGTATCCAGCTGTACTCTCTGGTGCACTGGGAGGACCCAATGGACGTGTCGCTGGGCCCCCAGGCTGGGCTGTACGGCTCCCCCGACACCTCTGTCACCAAGGAGGGACCCCTGATGTACCGTGTTGGCACCTCCTACCTGGGCAAGGAGCTGTGGAAGAGCTGCTACCTGGTGCTCAGCAATGGCATTCTGTACCAGTACCCTGAGAGGACAGACGTCATCCCACTGCTGTCCATCAACATGGGgggGGAGCAGTGTGGGGGGTGTCGCCGTGCGAACACCATAGAGCGGCCCCACTCCTTCCAGGTGATTCTGTCAGAGCGCCCCCCGCTGGAGCTCAGTGCCAACAGTGAGCAGGACATGGCTGACTGGATGCAGTACCTGTGCCAGTCTGTGTCCAAAGGGGTGGTGCCCCCAGGTGTGGCCCCGGCCCCGTGCTTGGCGTGCTGCCTGGTGCTGACGGACAAATGGCTGTTCACCTGCCACCAGGACTGCCAAACCAGCTTCTTCCGCGAACTGGGGGGTGCGGAGCTCGCCCACATCAGGGGGGTGCGGCTGGAGGGGCAGCGGGAGTACTGCATCATCgagTTTGTGGAGGACCGCAGGCAGTTCCTCCCACCCTGGGTGCTGTACTTCAGCTGCTGTGGGGAAAGGGACCGGCTGCtgcaggctctggaggaggcGTGGAGACACATCTACCAGGTGTCTCTGCCCCGGCTGCCTCTGCAGGACACCTCGGTGCAGAAGAAGTGTGGCGACGCGCTGTCCCTTCTGAAGAGCGTCTGGCAGCGCAGCGACAGTCTCCACCGCGGCCGTGCTCAGAGGGAGCCCTGGTGCTGAGATAGCGCGAGGGAGCGGCACACAGAGGGAACCCTAGTAGCCCCTGAGATGGAGCGGTGGAatgaaggagaggagagagagtagGGAAAGAGGGAGCAGAATATcagaaggaggagaaaaaagagaGGACAGAAGTTTTGTAGTttaaagaaggaagaaaaacgCACAAAGACTACTTTAACGGTTCAAAACAGAGGCGATCACAGCGTCtccaacaaaaacagcaacaccaCTGACATTAGCAATGAATctggggtgtgggggtggggagacTACACCTCTCTATAGCTCTGTACTGTCCTTTgtctagtttgttttttatttttgtgattataataataatttgttccTTCTGCCTGTATTGTTAAGACTGGGGTGGCGGGGAGATCTGCAGAAGATTATTCCActgtaggagagagagagacagagggagacgAAGAGTCTAACTGCTCATGGAGACTTATTCGATATGAAAAGACTAAAACGAGTGGTAGACTGAAGACGGGAGTTTGTCGTCAGTCAGCAGACGGACTGCACACCATTTATCGTTTGTACCTGCTGCATTGGCCTTGGGGTTCGTATTGTTATGAGCACATGGCAGCCCAGGCTCTGAGCCCTCCCTGCCACCTCACCTATCTACTGATTtacttttgtcattttatatgttttttttaattttatttccttgttggCAAATTGGTGGTAAGTTTCagttcacacaaaaacaaaagagtaATGTaggttgtattattattatttggtggGCATGGTTACAGTTTCTTTGCAAAGACAACTCACGGTGAGGTGCTAACTTAGTCATAGTAAAAGCTTTTTCAATATGACCTTTAAGCACTAAAAATGATTCTTTAAAGTAATGGCAGAAGtgtataataatgatattattcTCATAAACAGAGATGAGGTGTTTGAAAGCTGGATCTTAGGGttactatttaaatatactgttcTGTAGATACTGCTCTATTTGCACTTTTCCCCCAAGGAGTCTGaatttgtgtgtttgatgtcggtgcagtttttttctttgattgcACACATCACAAGTGCCTGTGAAGGAGGAGACGGACTGGTCACACTGTCTCCCCGAGTCCTCTCTGCTTGCTACGTTTCCTTCTGGCTCCTGCGCCCTCCTGTTGTCTCTGTCGCTtcttgtccctctctctcctcccccttctGTCATGCTATGACCATATATACACTACAGGTGACAGGCACTGTGTCTGCTGCACTAAGAGGCTCCGCAGTCTTACATCAGGGTGGGAATCAGGGAGTGGGGGGGTCTAGATCAATGGTACTGACCATCTGTTATAGTACGAGCTGTGAGAGCCCAGTGAAGGCCGCTCTGAGGCGCAGGAGGAGAGCAGCCCTGGCAGCGGGAGAGTTGTGCTCAGTGGGTTGCAGGGTTACATTTGTCTAAAATGCCAGATGTTGCGGTTTCCTGACTCgtaatacagtatatttgaaCTGTTCGCATTCACGTCTCTTTTTATTCCCCCAACGCAGACCTGTCAGGATCTGAAGGTTTAGGTttctatgaaataaataaaaatgataaagaaaaaagaaaaataatactactacCATAGTTTAACTCTTTGTCACCTCCATACGTTGTGTGAGTAtgtctgagagtgtgtgtgtgtgagtgagtgtgggcAGGAGTGCCAGTGCCAGACAGCTGTGGCTAGTGGTGTTCAGTAAACTGGGGTGTCCAGATGTTTACAGCTGGGGCAACAGGGCAGAGAGTGGAGAGATGGGATTGATAGGGAAGAAGTGGACATagaaagtaatacaataaaactgggGGTGgtagaaagagagggggggctGCAAACTAGCCAGGGTAGGCATACAATTCCTTTAAGtaagaaaggaaagaaaccGTGAGGTGAGAGTGGCTCATGTATATggtgtgtgggtgggggcaGCTGACAGCGGGTATTGAGCAggtcaaaactaaaataatacaattatcatCAAAGAAcgatcatatatatattatgggtGTTGCACATTGTTCGGGTTTAAGGCTCTGAATAAACACAGTACAAGCAGGTCAGAGGCTAAACTGTGGGCTGCCCTGGATTGGTCTAGCTCTATCCCATGCATGGACCTAAACCTGCTCTGTGTTCTCTCCTGGAGGGGTTGGTACAGAATCTTCAGTAGTGAATGTATAATAGTGTTAACCTCAAGTTACACATCCGTAATATCTGCATGTTtcaaagtttctttttttattaatatacatctctatatatagatatatatcacTGATATTGTTATAAtgctttatgtgtgtgtgtat
>TU153575
GTCAGTGTTATTGCATCCGTGCTTTAAATGATTGTTTCAGCAATTTATTCAGTTTCGTATTGAGCGGTCTTTCCCACACATCCTAGCAGGGGGTTTATTTGTGTGGCTTTCTtctgtaaatactgtattagggtttttattattgtagGTATTGTATCGCATGCTTTCTGTGCTGCTCGGCCGGAGACCGGGGGCGCAGATGAAAGAGTCCCAAGACGGCGTGACCTCGCAAAGAGTCAACACCAGAGACAGATAGAGAAGAGAGCCGGATAAACGGAAAGGAAAAGCGGCGTGGactgcctccctctcccccctcgTCTCTGACTGCGTCTGCCTCGCCGTCGGGACAGTGGACAGTCTGCGGCAGCCCCATCGATCTCACCGTAGGCGGGCCAGGAGACCTCCAGACATGGATCAACTGAAAGTCAAAGACCGCATCCTGGAGAACATCTCTCTCTCGGTCAAAAAGctCCAGAGTTACTTCGCCGCCTGCGAGGATGAGACGCCCGCCATCCGCAACCATGACCGGGTCCTGCAGCGCCTCTGTGAGCACCTGGACCACGCCCTGCTATATGGGCTGCAGGACATCTCCTCGGGGTACTGGGTGCTGGTGCTGCACTTTACGCGGCGCGAGGCAGTCAGACAGATCGAGGAGCTGCAGCACATCGCCACCAACCTGGGCCGCAGT

Function

symbol description
plekhm2 Predicted to enable kinesin binding activity. Predicted to be involved in several processes, including Golgi organization; lysosome localization; and positive regulation of membrane tubulation. Predicted to be active in endosome membrane. Orthologous to human PLEKHM2 (pleckstrin homology and RUN domain containing M2).

GO: NA

KEGG:

id description
K15348 PLEKHM2, SKIP; pleckstrin homology domain-containing family M member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002317 True 6023 mRNA 0.54 21 11514000 11527918
TU153575 False 688 TUCP 0.56 3 11524893 11527355

Neighbor

gene id symbol gene type direction distance location
AMCG00002318 NA coding downstream 4009 11505875 ~ 11509991 (-)
AMCG00002319 NA coding downstream 8754 11484759 ~ 11505246 (-)
AMCG00002315 NA coding downstream 46301 11459063 ~ 11467699 (-)
AMCG00002312 NA coding downstream 209155 11293094 ~ 11304845 (-)
AMCG00002313 NA coding downstream 234867 11278426 ~ 11279133 (-)
AMCG00002322 NA coding upstream 3360 11531278 ~ 11532015 (-)
AMCG00002321 LOC106582762 coding upstream 5632 11533550 ~ 11541279 (-)
AMCG00002320 NA coding upstream 14773 11542691 ~ 11546457 (-)
AMCG00002328 NA coding upstream 84478 11612396 ~ 11620659 (-)
AMCG00002326 NA coding upstream 101231 11629149 ~ 11630909 (-)
G122438 NA non-coding downstream 64209 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 104414 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 239473 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 700124 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 763219 10750411 ~ 10750781 (-)
G122530 NA non-coding upstream 74054 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 186491 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 190612 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 316474 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 319163 11847081 ~ 11848192 (-)
AMCG00002301 NA other downstream 666799 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1234016 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1660925 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1680776 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1712892 9757425 ~ 9801108 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 119993 11647911 ~ 11685089 (-)
G122597 NA other upstream 203699 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 320552 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 341689 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 467910 11995828 ~ 12006352 (-)

Expression


Co-expression Network