AMCG00002319


Basic Information

Item Value
gene id AMCG00002319
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11484759 ~ 11505246 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002319
GCCAGCTGCCGCTTCTGCTGAGAGAGCGAGGGTTTTGATTCCGTGACCCAGTGTAGTGGTGCCCAGCTTTGTCGCCTTTGCCTGTGGGAGGTGATGGGCAGGCAGAGAGGAGGCAGGGCACAGTGAGAGGGCAGGAGGTGGAGTTATGGCTCGGCTGCCTGTGCCCGGGTCCCTGCTGGTACCAGACTGGCACCTCAGCCCCGACAGCGAGGAGTATTTCCGCAGGAGCCACAGGAAGCGGTTTGGTCTGTTGGATGCTCCGGTGCTGCCCCCGCAGCTGGCCGTGGACACCGTCGGCTACAAGGTGTTTCTCTGTGGGAAGAGCGGGGTCGGCAAGACGGCCCTAGCAGCTCACTTGGCTGGCCAGGAGGTGCCCAGCCTGCACCACGAGACCACGGGGATCCAGACCAGTGTGGTGTTGTGGCCGGCGATGCTGAGGGCGAGCGGCCAGGTGCTGCTGTTCCGGCTGCAGCTGTGGGACTGCGGGGAGAACGCCCTGCGCCGGTTCGACCATCTGCTCCCAGCCTGTAAGGACCAAGCAGACGCGGTGCTCTTCCTGTTCTCCTTCACAGACCGCACCTCCTTTGATGACCTGTCCAATCAGATTGCCCGGGGCTCGGACCCCTCGGACAGTGCCGTACAGCTGGTGGTGGGCACCAAGTTTGACCTATTCATGCACAGCGATGTGACGGAGCGCGAGGTGCGCGATTTCCAGCAGGTGTGGGGGGTGCCTGTGTTCCGGGTCCAGAGCGGTGGGGCCACGGTGGGGCTGGAGGACATCGCGCCACTCCTCACCACCCTGGCGGAGCGGCTGTGGCACAGGGACATGCAGGCGGCCGGGCTGTGCGCCCCACCGCAGCCGGAGCCCACACACAGCTGACCGGACTGCGGCTCGGGTTCGAGGAGAGAGCAGGCGAAGGAGGGGGCTGAGCTCCGTTGAGAGCCTGGGGCGACGATGtgcaaggaaaaaacaaaactacattcACACCTAGACCTGGAGGAGTTCAGTTCCTCTTGGGGACACACTGCAGATCCAGGGAGACAAGACGGTCCTTAATATTGATATGTGTGCTAGGAAAAATCTGTCTTAATGTACTGCATATTAAACATTGAAAAGAATCTGAAGCATTGAGTTAAAACCTTCTAGCATCTTACCTTGGCATAACATCCTCCTAAAACTACTGACAATGCgtttattatgataattgcaataatgattgtaataatcataataaatgcattgtcaCTTACAGATGCATTGTCACTGTTGCGGTGCCGGGCCGTGTGGAAGCCAGCATGTCATTTCAGGTTTCTCCTTTTCGTGTGTCCCACCTGGCAGTGATCGTTCCCTCCTGTTCAAGCGTGGCTGTTCcgttacttttgtatttgtttatgtttgctGTTTGCAATAACAGTGGTTCTGTTCCAGTCAGGAAATGTACAGAAAACGTATCAAAGCAGTTGAACACAAGGTTTTCATTCCTgccatgatgatgatgatgatgatgatgatggtattGTTCTGTTCTGAATTTCATAGCCTGTGCAGTTCTGActaatgagaaaaaatacacCCTGTCCTCTCCCTCCAACCCACCTCCTACCTCCCCCTCCCTGCAGAGAGATTTgctgtgttgcatttttttcccaccataaatatttcatgtttcCTTATGTGAGTGCagcaatagagagagagggggaggggagggcaggggagggggagagtagactcagagagagagaggagagattaTTGAAAATCCAATATTGTAACTGTATTCTGTGCTGCACTGTACTCTGCTGTGCtctttgtactgtactgtgggattcaaaataaagattaatgcTCCCAGTTCTGGCACTGTGCAACCCCACCACCCTCCCCCCTCTGGGACAGGAAGCGCTGGCGTAAGGTTGCCCTGGCCAGGAGTATCACTTTGGGGGAAGGTTGGCGTGGTTCGGCGTGCCTATCAGGGCTCCGTGCTGCAGCCCACAGTGCCGAGCGATTGCAGGAGACGCTGCAGCGAAGAGTGGAGGAAGACCATGATGCGGAAGAAGAGCTCAGAGGCGCAGGCTGATGACAGGGACGTCCTGCTGGACCTGGGGCCCACTGGCGAGACCCGGGGATCCGAGGGCTACGGCAGCCTGCAGAACGGAGGCTACGTCCCGGCCCGATACctGGAGGACGAGGACGACGATGACCCGATCTATGTCCAGTGTGAGAGTGGGGGACGCCGCCCCCCCCAGCCCAGCGGGAACTACTTCAGAGACGGCAGGACCAAGATCGACTTCGTGCTGGTGTGGGAGGTGCGCACGCAGTCTCGGAGGAAGAAGAGGTCGAAAGGGCGCCACCAGGACCTGGCAAGGCCGGGCAGTGCTgaggtgggggaggaggagggggaggaacGGCGAGCGGACAGCCGCCGCTCGCAGCACCAGCGCTGGAGAGAGAAGTACATCCGAAACCTTCAGAACGCAGGACTGCTGCTGGAGAAGGAGGAGACGGTGAGCAAGAAGAAGACTCTTCACTACCTGAAGCTGAGCGCGCCCTGGGACGTGCTGGTGTACTACGCAGAAGAGCTGTGTCTGAGAGCTCCTCTACAGGCCCAGCCCAACCCTGACCTCAACACTTCAGCCCGTGTGCTGGAGAACCTCTGCATCCCCAACCCCCTGGCTGAGACGGTGCCCAACAAGCCACTTGACTACTACACCTGTGCCTTCCGCAAATCCAAGACAGACAGGTTCCTGGGCTGTGAGGACCAGGACAGCTACTTCAccaacacacagagacacaggatCGTGTACGAGATCCTGTCGTGCGCGCTGTACGGGAAGAGGAAGCGAGCCGAGGTGGGCGTGGAGAGGCTGCTGAATGAGGGAGCCTTCTGTGCCGCCTTCCCCCTGCACGAGGGATCCTTCGAGCTGCCAGAGTGTGAGGTTCCCCCAGAGGCCCTGAACCAGCGGCAGGTTCTGTACCAGTACTGGGCCCGCTGGTCCAAATGGTACAAGTACCAGCCACTGGACCACATCCGAGAGTACTTTGGGGAGAAGATCGCCATCTACTTTGCCTGGCTGGgCTTCTATACTGCCTGGCTTCTCCCTGCTGCTGTGGTTGGAAGTTTCGTCTTTGTTTCTGGAATTGTCTCCATGGGATCGAACACTCCTGCTGAGGAGATCTGCTCCAGTGGGGGGCGCTATCAGATGTGCCCTCTGTGCGAGACCTGCAGCGGCTGGAATATCTCTGAGATCTGTTCCATGGCCAAGATGGGGTATCTGTTTGACCACCCTGGCACAGTGTTCTTTAGTGTGTTCATGTCCTTCTGGGCCGTGACCTTCCTTGAGTACTGGAAGCGCAAGAACGCCACGCTGGCGCACCACTGGGACTGCATGGGCTTCCACGAGGATGAGgAGCGGCCACGGCCAGAGTTCGCAGCCATGGCACCGGCGATGGAGCAGAACCCAGTTACGGGTGTGAAGGAGCCCTACTTCTCTGAAAAGGACCGGCTCTCCCGCATCCTCACCGGCTCCAtggtcatcatcatcatgctGTGTGTTGTGATGATCTTCCTGGTGACGGTGATAATGTACCGCGGCATCGTGAGCATGATGATGTACCACACTGAGAGCCCAGTCCTGCACGCACAGGCCGGGAATATCGCGAACATCTCGAGCAGCATGGTGAACCTGGCCCTGATCCTGCTGATGGGACAGGTGTACACAGCGCTGGCCCAGCAGCTCACCAAGTGGGAGATGCACCGCACGCAGACGCAGTACGAGGACGCCTTTACCTTCAAGGTCTTCGTCTTCCAGTTCGTCAACTTCTACTCGTCCCCTTTCTACGTGGCGTTCTTCAAAGGCCGGTTTGTGGGCTACCCTGGGCACTATGGTACCCTGTTTGGCATGAGGAACGAAGATtgtggTCCGGGGGGCTGCCTGATCGAGCTGGCTGAGCAGTTATTCATCATCATGGTGGGAAAACAGATCATCAGCAACATCCAGGAGTTTGTCATCCCGAAGGTGAAGGCGTGGCAGCAGAAGAGGGAGTTGGCGGTGGGCCGGGGCAGCCGGTTGGGCCAGGAGCTGCGGCGCTGGGAGGAGGACTGCCAGCTGCTGCGATGTGAGGGGCTGTTCGAGGAGTACCTGGAGATGGtGCTGCAGTTTGGTTTCATAACTATCTTCGTGGCCGCGTTCCCCCTGGCCCCTCTGTTTGCCCTGCTCAACAACTGGGTGGAGATCCGCCTGGACGCGCAGAAGTTTGTGTGCGAGTACCGGCGACCCGTGGCCGAGCGCGCACAAAATATTGGTGTCTGGTTCAACATCCTGGAGGCGCTGTCTCACCTGTCCGTCATCGTCAACgCGTTCCTCATTGCCTTCACCTCAGACTTCCTGCCCCGGCTGCTGTATCAGTACAAGTTCAACAGCAGCCTGCATGGCTATGTTAACTTCACCCTGGCCCACGCCCCCCCCAGCTACCAACACCCCGAATACATGTACTGCAGgtACAAAGCGTTTCGAGACAGTGATGGAAACTACACTCTGTTTTACTGGGAGCTGCTGGCCGTCAGACTGGGCTTCATTATCGTCTTTGAGCATGTGGTGTTCTTCCTGCTGAGGGTGATAGACTGGCTGGTCCCGGACGTGCCGGAGTCTCTGGAGCTCAAGGTGAAGAGAGAGCGCTACCTGGCCAAGCAGGCGCTGGCCGACAACCAGGATGCCCTGTTGCTGGTGAGTCGAGGTTCAGCATCCAGCCCAGCAAGCGATGGTTCTCCATGCAACATGAGCGAGCGCCTGTGAGGAGATGGACAGAGATGTCCAGCCCGCAGagcgagggggagagagaacCAGAGGGATAGAAagaagagagagcgagagcgcaGCATGTGTGACTGGCTGGGGATGCAGGAAGTTGACTGTTGTTGCTGCTGGAACCTCAGGATACTCTGTTAAAGACTTTCTTCGACtggagtgtctgtctgtctctctttctctctttttctctttctctctttctgtctgccACTGTCTCTTTGTTTATCTCAGGCAGTAAAGGCCAGTCCTGGTCTGATGGGTGGTGGGAGTCCCTCCAATGTTGAAagaatgttaaattgtccccGTCAATAATATATGGCAAACTCCATAGGCATAGGGGACGCCTCTCAATATTGAGAGAGCGTAAATAATTTGCTCATAGGCATAATTTACAGGTGGAACATGTTCCCCCCCACTTCTGAAACGCAACCTACGTCACTATGTGGTCCTATAAGAGCCCCAGTGTGTTATATTCAGCTTCCTGTCCCATCTTACCTGAACTACTACTCCTGCTAAAGTGAGCCTGGTGTCCAGTGTGTTCCCAGCACTGCAGGGCTGAGACCCAGGGCAGCCCAACACTGAGACGAGACTGAGACTGCGCAGGTTCCAGGCTGTCAGTCTAATTATCTGTCTGTATGTCCATCACAGTTGGACCTGCCAGGCAGCGACCGCACCAGCTTCTAGGTATTAATTAATCTGTATTATCTGTTCGGAGGCTCGTGATtggttcatttgtttgttttgtttgtcagacGTGTTATAAAAGAGCTGTAAAAGGTGACGCAGCACTAGATTTATATATTACTAATAAAGTAAACGCACACACTCACGTAcatgcacacaagcacacacatacgctatcacacacatacacgcactcTGGAGATGTTTCAGAATGTAATGTCTctagttaattaatttgttcagtttACAACAAACTGTGGACCTAAATGTACGAGCATGCAGACAAACTCCTGTTTCTTTCTTGAAATATCTTCTGTGCGTAACTTTATACTGTACCTGGGAAATGTCCCGTGTGTCCATAGTCCAGctctatatttgtatttaaggaAAATGGGAATGCAGGAGCAATCAGCAATGGCAGCCGTCTCATTGGTTGTGTAACGCTATGTACTACTATAACAACTGCTACTGTGAAACACGCGTGTATAAATTATTATGGGGCGCGTGTCAGTGTAGGCTgctttgatgttgttgttgcctTTGGGAATAAATCTGTCTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002319 True 6058 mRNA 0.55 29 11484759 11505246

Neighbor

gene id symbol gene type direction distance location
AMCG00002315 NA coding downstream 17060 11459063 ~ 11467699 (-)
AMCG00002312 NA coding downstream 179914 11293094 ~ 11304845 (-)
AMCG00002313 NA coding downstream 205626 11278426 ~ 11279133 (-)
AMCG00002303 NA coding downstream 555756 10926868 ~ 10929003 (-)
AMCG00002302 NA coding downstream 694804 10755832 ~ 10789955 (-)
AMCG00002318 NA coding upstream 629 11505875 ~ 11509991 (-)
AMCG00002322 NA coding upstream 26032 11531278 ~ 11532015 (-)
AMCG00002321 LOC106582762 coding upstream 28304 11533550 ~ 11541279 (-)
AMCG00002320 NA coding upstream 37445 11542691 ~ 11546457 (-)
AMCG00002328 NA coding upstream 107150 11612396 ~ 11620659 (-)
G122438 NA non-coding downstream 34968 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 75173 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 210232 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 670883 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 733978 10750411 ~ 10750781 (-)
G122530 NA non-coding upstream 96726 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 209163 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 213284 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 339146 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 341835 11847081 ~ 11848192 (-)
AMCG00002301 NA other downstream 637558 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1204775 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1631684 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1651535 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1683651 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 8754 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 142665 11647911 ~ 11685089 (-)
G122597 NA other upstream 226371 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 343224 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 364361 11869607 ~ 11872862 (-)

Expression


Co-expression Network