AMCG00002320


Basic Information

Item Value
gene id AMCG00002320
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11542691 ~ 11546457 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002320
ATGGCCGCTGCGGGGATGTGTGTTCGGGCTCGGGCTGTGGTGTCTGGGTTCAGCGGGGCGCTCCTCTGCCTGTGCGTCCTGTTGGTGACTTTGCACAGAGCCGTGGCCGACGGGCGGACCCTGGTTTTGTTGGACAACGTCAACATCAAAGACACGCACTCGATATTCTTCCGGAGTCTGACCGACCGTGGGTTCGAGCTGACCTTCAAGACCGCAGACGATCCCAGCCTCTCGCTCATCAAGTACGGGCAGTTCCTGTATGACCATCTCATCATCTTCTCCCCCTCAGTGGAAGatttCGGAGGCAACATCAATGTGGAAACCATCACTGCCTTCATCGATGGGGGGGGCAATGTCCTGGTTGCTGCCAACTCTGACATCGgcgACCCTCTGCGTGAGCTGGGCAGTGAGTGCGGGATCGAGTTTGACGAGGAGAAGACTGCTGTGATCGACCATCACAACTACGATGTGTTGGACCCTGGGGAGCACACCCTGATAGTGGCTGACCCAGAGAACCTCCTGAAGGCCCCAACCATCGTGGGCAAAGCCAGCGGGAAACCGGTGCTGATGGTGGCCGACCCTGACAACCCCCTGGTGCTGGACATCCTGACCGGCTCCTCCACATCCTACTCCTTCTTCCCAGACCGACCCATCACTCAGTACCCTCACGCAGTGGGCAAGAACACGCTGCTGGTGGCGGGGCTGCAGGCTCGGAATAACGCCCGTGTCGTGTTTAGCGGCTCCCTGGAGTTCTTCAGCGATGCTTTCTTCAACGCGCCTGAGCTGGCAGTGGCTCTGTCTCGCTGGGTGTTTAAGGAGGAGGGGGTACTGCGCGTGGGTGCCGTGTCACACCACCCCGTCGGGGAGATCAGCCCCCCCAGTGCCTACACCATCACTGACCTTGTGGAGTACACCATCGTGATTGAGAAGCTGTCCGAGGGGAAGTGGGTTCCCTTCGACGGCGATGACATCCAGCTGGAGTTCGTGAGGATCGACCCTTTTGTCAGGACCTACCTGCGGAAGAAAGgtgcatgctgggagtgtACAGGTGTTAATGTCTCTATCTTGCGTTCTCTCCCCCAGGTGTCAGTGCGCCCTCTGCAGCACACTCAGTACGAGCGTTTCATCCCCTCTGCCTTCCCCTACTACGCCAGCGTCTTCTCCATGATGGGTGGGCTCTTCCTGTTCAGCATTGTCTTCCTGCAcatgaaggagaaggagaagtcggagtag

Function

GO:

id name namespace
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002320 True 1233 mRNA 0.59 10 11542691 11546457

Neighbor

gene id symbol gene type direction distance location
AMCG00002321 LOC106582762 coding downstream 1412 11533550 ~ 11541279 (-)
AMCG00002322 NA coding downstream 10676 11531278 ~ 11532015 (-)
AMCG00002318 NA coding downstream 32700 11505875 ~ 11509991 (-)
AMCG00002319 NA coding downstream 37445 11484759 ~ 11505246 (-)
AMCG00002315 NA coding downstream 74992 11459063 ~ 11467699 (-)
AMCG00002328 NA coding upstream 65939 11612396 ~ 11620659 (-)
AMCG00002326 NA coding upstream 82692 11629149 ~ 11630909 (-)
AMCG00002333 NA coding upstream 147880 11694337 ~ 11700677 (-)
AMCG00002334 NA coding upstream 156879 11703336 ~ 11705695 (-)
AMCG00002335 NA coding upstream 161801 11708258 ~ 11711311 (-)
G122438 NA non-coding downstream 92900 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 133105 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 268164 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 728815 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 791910 10750411 ~ 10750781 (-)
G122530 NA non-coding upstream 55515 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 167952 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 172073 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 297935 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 300624 11847081 ~ 11848192 (-)
AMCG00002317 plekhm2 other downstream 14773 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 695490 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1262707 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1689616 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1709467 9830519 ~ 9833224 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 101454 11647911 ~ 11685089 (-)
G122597 NA other upstream 185160 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 302013 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 323150 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 449371 11995828 ~ 12006352 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G121050 NA non-coding NC_056715.1 CM032084.1 14391396 ~ 14392044 (+)