AMCG00002321 (LOC106582762)


Basic Information

Item Value
gene id AMCG00002321
gene name LOC106582762
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11533550 ~ 11541279 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002321
ATGCTTCTCACGGTGTTCTGCGTCCGGAGAGACCGCTCCGAAGTCACTTTCTCCATGGAGGTTTCCCCAGAGCTGGAGCTACGGGATTTCATAGCCCTTTGCGAGCTTGAGTCGGGAATCCCCGCCGCAGAAATACAGATCACATATGCAGAGCAGCCCCTGGGCGACACTGCTCGCGCGCTCGCCACCTATGGCCTGAAGGATGGCGATGTGGTGGTGCTCCGGCAGGCAGATAGACCCCCATCCGTGCAGCCCGCCTTCCCAGGTATGAGGACTCTGGGCGCCCCCCCCCTGCTGGACACAGAGGCGTTCTGTGacttgCTCCATCGCTGTTCCTGGGACCTCCACCGGGCGCCGCCCCACCCCAGCAGCCATGCAGCAGCAgcgctcccccccccccccccgcccccaccccctacCCTGCAGCCTGGCTCCAGCTCCGCCTCCTCTCCCCAGGGATTGGACGATCCAGCCCTGCTGAGGGATATGCTGCTGGCCAATCCACACGAGCTATCCCTGCTGAAGGAGAGGAACCCCCCTCTGGCAGAGGCACTGCTGAGTGGGGACCTGGAGCGGTTCACCAAGGTGCTgctggagcagcagcaggagcgTGCGCGCCGCGAGCAGGAGCGGATTCGGCTGCTGACCGCTGACCCCTTCGACCTTGAGGCCCAGGCCAAGATTGAGGAGGACATCAGGCAGCACAACATCGAGGAAAACATGACGATCGCGATGGAGGAGGCGCCTGAGAGCTTCGGCCAGGTGGTGATGCTCTACATCAACTGCAAGGTCAACGGGCACCCGGTCAAGGCCTTCGTGGACTCAGgTGCCCAGATGACCATCATGAGCCAGGCCTGTGCTGAGCGCTGCAACATCATGCGGCTGGTGGACCGGCGCTGGGCCGGCATCGCCAAGGGAGTGGGCACACAGAAAATCATTGGGCGTGTGCACCTGGGCTCAGAGACCCGCTTTCTGCCAGAGGCGGAGTTGCCAGAGTGTGCCAGGCTGGCCTACGGGCCAGGCCGTGAGGACACCCAGCCTGATGAGATTGCTGACCGTGAGCTGGCAGAAGCCCTGCAGAGATCTGTACAAGAGACAGatatTGAAGATGGACAAACTACCTCACCAACATCCCCTCCATTCCCCCAGCCAGTCGCCCTCcccaacagcagcagcagcaggtcaCTCCCCCCTGCTGCCGTCCCCCTCAGTGAAACCCTGGACTGCTCGACCCCGGCCCTGGCCTCCCTGCCTCCTGACTCTGCCCGCCCAGCCCAGGTGAGCCAGGACCTGTCTGAGGGGGGTTCTGagcctctctctccatcaggCCGGGGGTGGGGACCGGAGAGCCCCCCGGGCCCAGGGCTATTAGTTTCCCAGGATCCCAATCCAGAATCTGATCAGAAGCCATCGGCTCCCCAGCTGACCTCGGCTCTGGGAGCGGAGGTggcctctccctcttcctcctcctcccccagtGTGTTGCCCCGGCCTTCCTCTCCAGACACCTCAGGGTTTGGCCCTGAACTCAGTCCAGCTGCGGGGGGGGCAGTCTggtcgcccccccccccctccggTTTCCCACGAGATGCGCCCCACCCTCTATCCGCCATGGGCGCCCATCTCCCAGAAGACGTTCAGCTCGCCGACAACAACACGCTGTCCAGCATGCAGGTGGACACCAGAGCaggggaggaggcagagggagagggagagtccGAGCAGCATCCCTGTCCTCCAGGCGAGGCCGGGGGCGCAGAGGAGGCTGCAGGCGCTGAGAAGGTGCCAGGTTCacgggagagggagggagacgtGGAGGGTCCTGGCACCGCCCAGCATGACCCTGACCTTGAGCAGCACCTCCACCTTGACAGTGACCTTGACTTTGACCTGGGCACAGAGGGGGTGGGCAGAATAGCCCCTCAGTCCCTGGAAGAGAGTGCCTCCCTAGCCAGCTGCTTTGAGTGTACAGGGGGCAAGATGGGAATGGGGAGAGAGAcacccccctcttcctccccctcctcttcttctGCCTCTGCTGGGCTCCCCCCCGCCTCAGACTATGCCATTGAGACCCTGCCCCCAGAGGAGCTGATGGACACCACCCCTTCCCTTGCTGCTGCACTGCTGGAGCTGCATGAGCTCCTGCCACCGTTCTGCAgtgccctccccctccccgcCCCCTCcaccaacacccccccccaggGGAGAGGATGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582762 isoform X1

GO: NA

KEGG:

id description
K11885 DDI1; DNA damage-inducible protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002321 True 2217 mRNA 0.65 9 11533550 11541279

Neighbor

gene id symbol gene type direction distance location
AMCG00002322 NA coding downstream 1535 11531278 ~ 11532015 (-)
AMCG00002318 NA coding downstream 23559 11505875 ~ 11509991 (-)
AMCG00002319 NA coding downstream 28304 11484759 ~ 11505246 (-)
AMCG00002315 NA coding downstream 65851 11459063 ~ 11467699 (-)
AMCG00002312 NA coding downstream 228705 11293094 ~ 11304845 (-)
AMCG00002320 NA coding upstream 1412 11542691 ~ 11546457 (-)
AMCG00002328 NA coding upstream 71117 11612396 ~ 11620659 (-)
AMCG00002326 NA coding upstream 87870 11629149 ~ 11630909 (-)
AMCG00002333 NA coding upstream 153058 11694337 ~ 11700677 (-)
AMCG00002334 NA coding upstream 162057 11703336 ~ 11705695 (-)
G122438 NA non-coding downstream 83759 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 123964 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 259023 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 719674 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 782769 10750411 ~ 10750781 (-)
G122530 NA non-coding upstream 60693 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 173130 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 177251 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 303113 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 305802 11847081 ~ 11848192 (-)
AMCG00002317 plekhm2 other downstream 5632 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 686349 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1253566 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1680475 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1700326 9830519 ~ 9833224 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 106632 11647911 ~ 11685089 (-)
G122597 NA other upstream 190338 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 307191 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 328328 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 454549 11995828 ~ 12006352 (-)

Expression


Co-expression Network