AMCG00002325


Basic Information

Item Value
gene id AMCG00002325
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11623781 ~ 11628341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002325
GCTCCAGCAGGCATCCTACCAATAAGTACCCCCTTCCCAAACACACTCACCTCTCcctcacaggcacacacacacacacacgtgcacatgcacacacacacacaaaagcccaTAACTGAAGTTGCTGTATAAAAGCCAGGCGGAGCAGCATTCCTGTAGAGAACAGTGTGTGAGAGGCTGGGAACACAGCAGACAGACCCTCTTCAAATACACTGAGAGAGAccaaggcagagagagagacggagagagacagggggctccagagagaacgagagagacagagggcgAGTGAGATCCAGAGGAAGACAAAGAGTCTGAGAAGATCCAGAGAGAGTGGAATACACACAAacggatagagagagagagagagagagagagagagagagagactgcgaAACTTGGACACTGAAGAGCTGCTCTTCCTCCACACTCCCCTGTCTGGATCTGTCTTCCTGATCTTCCTCACGCTCATCTTCCTCCCTCCCAGcaaggtgtgagtgtgtgtgagtgcgcaGCCTCCCACTACTACCCTCCAAACCCACCATtttcccacccccccacccaccgtCAATGAGCCTGAAAAACGCCTCTTCAGCCTTCCGATCGGAGCGCAGTTTCCACCAggcttcctcctcttcctcttcctcctcttcctccggCACCGAGCCGCACATGGAGAAGACCAGAGGGATCTTCGGTGAGGAGTTCGGCTCCTTCCTGCGACCACATGAGGAGCAGCGCAGCTTCACAGCTCGCCCTGGCAGTGCTGGCACTGTCCGCACGATGGGAGACACGTACCAGTTCACTGTGGATGTCAGCGACTTCTCTCCTGAGGACGTCATCGTCACCACGTCCAACAACCAGATCGAGGTCCGCGCTGAGAAGCTGGCTCCTGATGGCACAGTGATGAACACCTTTACCCACCGGTGCCAATTGCCAGAGGATGTGGACCCAACCTCTGTGACTTCTGTCCTGGGGTCCAGCGGGGCACTCACCGTCAAGGCCCGGCGCCACCCAGCCCGGCCCGGCGAGCATGGCCAGCAGACCTTCCGCACTGAGATCAAGATCTGAGCCACAGTGGGGAGCCCGCCCCAGTACCCCCTTGTACCCCTCTCTGACTCTCTGTACACACCCTATAGCCCCTGTACCTCCTCTGTTCCCCTACTGTACTCTGTACAGCCTATAAGCTACAGGGTTGTACTTCAAAGATtgtgtagtatatatatatttaaacataataattaaaaaaactatgtaGGATGTACAgctaataaataagtaaagttttctcacaatgtaatttttaaaatgtgactattttcaagttttgcttttgattgtcCTGTAACTGTAGCTGGCATTTTCTGGATCAGTATATGGGTTTGTTTACAGTGGTGCTTTCTTTAGTAGAGATGGACTGTAggggcttgtttgtttgtttgttttaatggagtTTGAGTCCAATTGCCCTCCAGTTTGCCAACTCTCCCATcgcagaggtcagaggtcagaccAGAGACTGAacgcctctctctctcggcaGGACTGCTCTTGCACCTACAGGTGTGGAAATCCaacaagagaaagagagagagagagagagagagagagagagaggaagcgTGGTAGAGGGAGAGcgagtgggagagagagtgcaggAGAGGACTTGAGAAATGTCAGAAGAACCACCCTTCTGCTCTGGACCAAATCAACAACACATCCATCACCTCGCCAAGCACAGAGACGACCGCTCCCCACAGTGCCCACTGCGTCCCTCCTGCTCCCCGCCCATTGTATGTTGTTCAGTGATGtatttgtcttgtgtgtctatttatttttccccgGTGCAGTCATTTGCGCCGGTGTATTGATCTAGACCAGCCCTTCTTCTGAGTGGGTTCAGCAGCAGTTACCGGGAGCATAcacaattattataaattatttaatcaataaagaaattaaactgcagCCCTTCAGAGTTTGGAAGTGTTTAGACTTCAGTGCAGAATAGAACAGCTTCTGTGCTTTCAGCTAGCAGTTGTGTTGTGCCGTGCTGTGTGGTGTGCTGttgtactgcactgttttcAGCAGGGAAAGGTGCTCAGTGCAACACCCTTTAACtcgaaggaaagaaaaaacacatgccTAGGTTTACTGCTCTGGCCTCAGCCCTGCACAGCCTGACCCTGCAGCTGCCCTCATGCCCCGAGGCGGGAGGGTTGGTGCACTGACTACATAAGTGTTGAATTTTTACATTGCCAATAAAGTGTCTGTGAGTCCC

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K09546 HSPB7; heat shock protein beta-7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002325 True 2281 mRNA 0.51 3 11623781 11628341

Neighbor

gene id symbol gene type direction distance location
AMCG00002323 NA coding upstream 11546 11602210 ~ 11612235 (+)
AMCG00002316 NA coding upstream 35887 11565009 ~ 11587894 (+)
AMCG00002314 NA coding upstream 217317 11392955 ~ 11406464 (+)
AMCG00002307 LOC105898973,LOC106572187,LOC103032744 coding upstream 352452 11255732 ~ 11271329 (+)
AMCG00002309 NA coding upstream 378801 11214084 ~ 11244980 (+)
AMCG00002324 zbtb17 coding downstream 8472 11636813 ~ 11644784 (+)
AMCG00002329 NA coding downstream 103264 11731605 ~ 11738113 (+)
AMCG00002332 NA coding downstream 109983 11738324 ~ 11741047 (+)
AMCG00002330 NA coding downstream 123310 11751651 ~ 11766591 (+)
AMCG00002343 NA coding downstream 163073 11791414 ~ 11792870 (+)
G122478 NA non-coding upstream 80160 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 90321 11530886 ~ 11533460 (+)
G122470 NA non-coding upstream 95683 11525232 ~ 11528098 (+)
G122469 NA non-coding upstream 100159 11523227 ~ 11523622 (+)
G122468 NA non-coding upstream 100667 11522872 ~ 11523114 (+)
G122501 NA non-coding downstream 57091 11685432 ~ 11686318 (+)
G122549 NA non-coding downstream 88014 11716355 ~ 11716701 (+)
G122592 NA non-coding downstream 228137 11856478 ~ 11857326 (+)
G122737 NA non-coding downstream 476329 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 500039 12128380 ~ 12129678 (+)
AMCG00002311 ttll10 other upstream 244213 11365614 ~ 11379568 (+)
AMCG00002310 NA other upstream 263941 11357552 ~ 11359840 (+)
AMCG00002296 NA other upstream 869888 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 1018942 10567912 ~ 10604839 (+)
AMCG00002272 NA other upstream 1772469 9844205 ~ 9851312 (+)
G122482 NA other downstream 671 11629012 ~ 11630892 (+)
AMCG00002331 NA other downstream 60259 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 82109 11710450 ~ 11715372 (+)
G122582 NA other downstream 207098 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 266132 11894473 ~ 11898701 (+)

Expression


Co-expression Network