AMCG00002328


Basic Information

Item Value
gene id AMCG00002328
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11612396 ~ 11620659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002328
GTTTGAAGGTCAGAAGGTACCTGTGTGGCTGCAGATCTCACCTATTCCTGCTCGGCCAGGTGTGTTTGCGGCTCAGACTGGTCTCAGGGGCAGGACTCCTGTTGGCTGGCGTTGCGACAGCTCTGGGCTCGGTCAGACAGACTAcgagacactgagagactgagacgcagagactgagagacacatACTGAGAGACTGTGAAGCTGAGAGACAcgctgagagacagagacacagacactgagagactggGAGTGAAAGAAAGACCAAGGGACACACAGACGCTGCCTCTGAGACAGAAGAATTGATCAAGTGTCTTCCTCACATGGAGGGGGTCTTGACCGGAGCAAGGGGAGTGGGTGATGCAGGAGCCaatcagacagagagaggggaggtgaCAGATGGTCAGAGGGCGGGGCCCCATGAGAAGCTCCTCCTCCTGCAGAAGAACTCATGTAAACCATGGCCCCGCACACGGGccaaggtcaaagGCTGTCTGGGGTGCCTGGCAAGGGTGCTATGCCGGACAGGTGTGGCACGCTGGATGTGTCTCGCAGCGCTGGGCATCCTCACCGCCCTCACCAGCTGCTTCATGGACTTCACTACCGACAGAGTGCTCAacgCTCAGCGATGGCTGATGGGCTCTGTGGGGGGTGGCGTGGGGTTGCAGTACCTGGTCTGGATCGTGTGCCCAATCGCCTTGACAACCTTCGGCACTGGATTCACACAGAGCGTCTGTCCACAGTCTGCTGgCTCAGGTGTGCCTGAGGTGAAGACGATCATGGGGGGGGTGCCACTACCAGACTACCTGACCCTCAACAACCTGATAGCCAAGATTGTGGGCATGACCTGCACCCTGGCTGCTGGGAGCCCTGTATTCCTGGGCAAACTGGGTCCTTTTGTCCATCTGTCCACTATGGTGGGGGCATTTCTGAACCGGCTGCTCAGCATCGTCTGCGAAGTGGGGGAGGAATCCTTCCACTATGAAATGCTGGTGTGTTCCGCAGCAGTGGCCATGGCAAGCTGTTTTGGGTGTCCCATCAGCGgagtgCTATTCAGTGTGGAGGTGATGTCATCCCACTTCGCTACCAAGAACTACTGTCGCTCCTTCTTCACTGCCATATGCGGGGCCATGATGTTCCGGATACTGGCAATCTGCAGCAACGAGCGTGAGACAATCCTGCCACTGCTCAGCACCTCCTTCCCTGTGGACTTCCCCTTCGACCTCCCTGAGATGGTGTTCTTTGCTGTCCTGGGgctGCTGTGTGGACTGCTGTGCGTTGTCTACCTGTTCGGCCATCGCTGGATCATCCGCTTCACcctcaaaaataaaatcctcaaGAAGCTGCTGACCACCGAGAAGACTCTGTACACGGGGCTGGTGGTGTTTGTGCTGGCAAGTATGACGTTCCCTGGCAGTGTGGGCTGGCTGATGGCCTCCAGGAACAGCTCCGAGCCCTGGCCCCCAGCACAAGTCGACGTAAAGAGGCTGTGGCTGGAGTGGACCCCTCCAGGAATCAGTGTGTTCACCACACTAGGGGTCTTCCTGTCCatgaagTTCTGGCTGCTGCTCCTGGCCTGCACAATCCCGATGCCTGCTGGGTACTTCATGCCTGTGTACCTTTACGGAGCTGCGATTGGTCGGCTGGTGGGGGAGTTCGTGGCTTTTGTGTTCCCAGAGGGGATCCAGTCCGAGGGGTCTGTTAACCCTATAAACCCTGGAGGATATGCGCTGGCTGGTGCAGCGGCGTTCTCGGGCGCAGTGACGCACACTCTTTCCCCGGGGCTGCTGGTGCTGGAGATGACCGGGCAGCTGTACCACTCCCTGCccgtgctgctggctgtgctgctgTCCAACGCTGTCTGCCGGCGCTTCTCGCCCAACTTCTACGATGGCATCATCTTGATCAAAAAACTGCCCTACTTGCCCATGGTCCTGCAGTACCACCCTGAGCTGTGTGCGGTAAAGGTCAGTCAGTTGATGAAGCGTTCAGTGACGGTGCTGGCGAGGTGTGGCAAGGCGGGGGAGGTGAGGGCGGCGCTGACCGCTGTCCAGGACAGCGAGATCCCCGTGGTGGACACCCTCGaCTCCATGATTCTGCTGGGTTCTGTGTGCCGGTCTGAGCTGATCCGCTTCTTGCAAGAGTCCACTGGATCGGGATTGGACAGAGAACTGGGGGAGGTGTGCATTATTCAGCCAACCACAGCTCAGCTCTTGTCAGAGACCACCATCAAGCAGatGAAGAAAGCAATTGAAGACCTGGCCAATGGAAAAATATCTCCACCAACATAAACTGCTTGGCCTTCTCCCCTCTCACTGTGCACCTCAATGCCTGCGTCTGACAAAGCGTACAATGCAACCTAAGCCGTAACAGCCTGCCACACCCTGCAGCTGCTTAGTAGCGCATGATGCGAGGCTCGCGTCTAAACAGCGGTTGCTTTGGACAGACAGCAGcataaaaccacaaataaacacaaacatattatAATAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K05018 CLCNKB; chloride channel Kb

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002328 True 2489 mRNA 0.57 19 11612396 11620659

Neighbor

gene id symbol gene type direction distance location
AMCG00002320 NA coding downstream 65939 11542691 ~ 11546457 (-)
AMCG00002321 LOC106582762 coding downstream 71117 11533550 ~ 11541279 (-)
AMCG00002322 NA coding downstream 80381 11531278 ~ 11532015 (-)
AMCG00002318 NA coding downstream 102405 11505875 ~ 11509991 (-)
AMCG00002319 NA coding downstream 107150 11484759 ~ 11505246 (-)
AMCG00002326 NA coding upstream 8490 11629149 ~ 11630909 (-)
AMCG00002333 NA coding upstream 73678 11694337 ~ 11700677 (-)
AMCG00002334 NA coding upstream 82677 11703336 ~ 11705695 (-)
AMCG00002335 NA coding upstream 87599 11708258 ~ 11711311 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding upstream 99557 11720216 ~ 11725951 (-)
G122438 NA non-coding downstream 162605 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 202810 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 337869 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 798520 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 861615 10750411 ~ 10750781 (-)
G122548 NA non-coding upstream 93750 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 97871 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 223733 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 226422 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 236732 11857391 ~ 11859325 (-)
AMCG00002317 plekhm2 other downstream 84478 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 765195 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1332412 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1759321 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1779172 9830519 ~ 9833224 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 27252 11647911 ~ 11685089 (-)
G122597 NA other upstream 110958 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 227811 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 248948 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 375169 11995828 ~ 12006352 (-)

Expression


Co-expression Network