AMCG00002334


Basic Information

Item Value
gene id AMCG00002334
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11703336 ~ 11705695 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002334
ATGCTGTCCTTCCTGCGCTCCTGGCTGCCCGGGGTCCCCGGCTTGTGGCCGCTCTCTGCAAACCCGCTGGACTGTCTGCTGCAAGgGCTGGTGGCGTCCTGTGGGATCTCCGTGCTGTGCAACCTGATGAGGATCCATCTtgcgGTGCGCGGCGGGCTGCGGGGGGGCGGGCTGCTGGACTGGGCTGTGCTGTGGGTGCTGACTGGGCTGCTGGCGCTGGTGGGCCCACGGGTTGCTGCCCTGCTGGTGCTGGAGTTCTCCCTCAGGGCCGTCTCCGCCCGAGTCGCTGGGCAGCAGGGTCCTGGGGGGCAGCTCCTGGTTCAGTGCCAGTTCTCGCTGGGCTGCGCGCTGACCTGCAGCCTGAGCTTCCTGCAGGAGGGGGCGGCGCAGCGGACCCTGGGGCTGGTGTTGGCAGCGGGGCTGGCGGGACTGCTGTCCTGGTGTGCACAGTCGGCCTGGCGCCACGTGGGGGTACTGTACCCCCTGCACAGCTCCCAGCGCTACTGCGGGCTGTGCCTGACCCTGCTGTCCCACGGCTGCTCCCTGCCCCGCCTGCTGCGCCGGGCCCTGAGCCTCTGCTTCCTGGTGGCCGACATCGCTGCAGTCGCCCTCGTCAACCGCGACTTCCTGTCCACCGGAGACGCCCTGCGCTTCTGGACGCCCCTCACCATCTGCTACACCCTGCTGGTGGTGTACATGCAGGaggagcagcagcagcggcccgGAGAGGGGGTGGTTTTCCGTACAGCAGGGGTGCGTCTGGGGGGACTGCTGGTGCTGATGCTGACCGTGGGCCGCTGGACAGACGTGCTGGACATCGGTGTGTGCCTGCTGGGCGAGGCCTGCTGCCTGCTGACCGCTGGGGACATGCTGTCTGCTCTCCGTGCACAGGTCAGAGGGGTCAGCGAGAGGGCAGAGGGCACGTAG

Function

GO:

id name namespace
GO:1902652 secondary alcohol metabolic process biological_process
GO:0008203 cholesterol metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002334 True 927 mRNA 0.69 5 11703336 11705695

Neighbor

gene id symbol gene type direction distance location
AMCG00002333 NA coding downstream 2659 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 72427 11629149 ~ 11630909 (-)
AMCG00002328 NA coding downstream 82677 11612396 ~ 11620659 (-)
AMCG00002320 NA coding downstream 156879 11542691 ~ 11546457 (-)
AMCG00002321 LOC106582762 coding downstream 162057 11533550 ~ 11541279 (-)
AMCG00002335 NA coding upstream 2563 11708258 ~ 11711311 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding upstream 14521 11720216 ~ 11725951 (-)
AMCG00002338 NA coding upstream 61589 11767284 ~ 11772145 (-)
AMCG00002337 NA coding upstream 67901 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 81807 11787502 ~ 11790736 (-)
G122530 NA non-coding downstream 74901 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 253545 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 293750 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 428809 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 889460 10812186 ~ 10813876 (-)
G122548 NA non-coding upstream 8714 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 12835 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 138697 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 141386 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 151696 11857391 ~ 11859325 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 18247 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 175418 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 856135 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1423352 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1850261 9836918 ~ 9853075 (-)
G122597 NA other upstream 25922 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 142775 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 163912 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 290133 11995828 ~ 12006352 (-)
G122862 NA other upstream 1322502 13028197 ~ 13029406 (-)

Expression


Co-expression Network