AMCG00002335


Basic Information

Item Value
gene id AMCG00002335
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11708258 ~ 11711311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002335
CTGTGGCCCCCCCTGGACTTCGTCCTAGGCGCGGGGGCGTGCTGTGGGGCCTGCCTGTTCACCAACCCCCTAGAGGTGGTAAAGACACGGCTGCAGCTGCAGGGGGAGCTGCGCGCTCGGGGCTCGTACCCTCGGCAGTATCGTGGCGTGCTGCAGGCGATCGGGGCCGTGGCACGGGCTGACGGCCTCCTGGGGCTGCAGAAGGGGCTGACAGCTGGCCTGCTGTACCAGGGAGTGATGAACGGCGTCAGGCTGGGCTGCTACTCCTACGCCCAGGCTGCAGGCCTGACTGGGCTACAGGGGGGAAGCCTGCTGGCAGGCGCTGTGGCCGGGGCCTTAGGTGCCTTTGTGGCCAGTCCTGCCTACCTGGTAAAGACTCACCTGCAGGCTCAGAGTGTAGCGGCCATCGTCGTGGGACACCAGCACAACCACCAGggaGTGTCCAGTGCTCTGGGCAGTATATACCGCAGTGGGGGGGTACTGGCCTTGTGGCGGGGCGTGAGTGGCGCCGTGCCCCGGGTCATGGTGGGCTCAGCTGCCCAGCTCGCCACCTTCAGTGCTGCCAAGGACTGGGTCACCTGCCACCAGTGGTTCATTCCGGACAGCTGGTTGGTTGCCCTGACTGCAGCTATGATCAGCAAGGGGCCACTGGGCCTATACAAGGGCCTGGGCCCAGCCTTCTTGCGGCTGGGCCCCCACACTGTACTCAGCATGCTGTTCTGGGACCTGCTGCGCCAGCGAGCTTTTTTATATCAGTGTGGTGAGGGGCAGAGC

Function

GO: NA

KEGG:

id description
K15117 SLC25A34_35, OAC1; solute carrier family 25, member 34/35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002335 True 774 mRNA 0.66 5 11708258 11711311

Neighbor

gene id symbol gene type direction distance location
AMCG00002334 NA coding downstream 2563 11703336 ~ 11705695 (-)
AMCG00002333 NA coding downstream 7581 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 77349 11629149 ~ 11630909 (-)
AMCG00002328 NA coding downstream 87599 11612396 ~ 11620659 (-)
AMCG00002320 NA coding downstream 161801 11542691 ~ 11546457 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding upstream 8905 11720216 ~ 11725951 (-)
AMCG00002338 NA coding upstream 55973 11767284 ~ 11772145 (-)
AMCG00002337 NA coding upstream 62285 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 76191 11787502 ~ 11790736 (-)
AMCG00002346 NA coding upstream 89130 11800441 ~ 11803744 (-)
G122530 NA non-coding downstream 79823 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 258467 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 298672 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 433731 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 894382 10812186 ~ 10813876 (-)
G122548 NA non-coding upstream 3098 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 7219 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 133081 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 135770 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 146080 11857391 ~ 11859325 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 23169 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 180340 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 861057 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1428274 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1855183 9836918 ~ 9853075 (-)
G122597 NA other upstream 20306 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 137159 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 158296 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 284517 11995828 ~ 12006352 (-)
G122862 NA other upstream 1316886 13028197 ~ 13029406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020649 slc25a34 coding NC_007133.7 CM002906.2 184670 ~ 188112 (-)