AMCG00002338


Basic Information

Item Value
gene id AMCG00002338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11767284 ~ 11772145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002338
GCTCGCCCGCTCGGCGCCTCAGACACAGCGGACAGAGACCGGCGGACTGACCGACTGAAAGCGTTCCAGTATTCTTCTACCTCCAGAGTTGCAGAGTGAAGATGAGAGCCAGCAGCCTGCTCCTGCTCTGCCTGCCTGCCCTCCTACTGGCTCAGCAGCAGTATGAACACACAGATGAGTTCTACCCGAAGCAGTACAACCAATACAACCCCGTGGGTGAGAGAGCTGTCCCACCGCTCCATCCCCTTCGGAGAGTGTACGTTGTGAATAAGGAGGTGTGTGTCCGCACGGTGTGTGCCCACGAGGAACTGCTCCGAGCTGACCTGTGCCGTGACCAGTTCTCCAGGTGTGGGGTGCTGGCAGTGAGTGggcagtgtggcagtgtgagcTCATCCTGTGTGAAGAGCTGTGGGGGCTGTTAGACTGGAGCTGAGCCAGAGAGACCCTTGCACTCAGGACCACCCTTTCCCCTCGCACCTGGGACCCTCCATATCTCCCCTCTcattcccctcctctctccccctctccctctctctcagtttcCAATTCAACACAAACTTTATTGGCGTGACTGAgtgacatcagtgttgccaaagcactgACAGACAGGCCCTGTGCTCAGGAACAGGGCAATGGGGAACAATACATACAGTagatatatattagaaaattaACAGGCATAGTTACACAAGTGATATTTAGATATAAGTGTTGTGtacacagtatacacagtgCTCTCTCCCCCTGTGTGTTCTTCAGAATGAACCTggttattgtactgtattgtatagtaCTGTATTCACATACCTGCATGGTGCTACAACCTAAGACCCCACCCCTTTCCTGACCCCACCCTCATCATTCTCCTGGACCAATCCCTGTTCCTCTGTTGATAAAATAACTCCTCCCACTCCATGTCACAATCGTATCCATGACTCACCTCCCTTAAACCCGAAATGCCATGCAAAGGGTTACACCTGTATTTGCATGGCCCCACCCATCGATCACATGACCACGCCCCACCCCCATCGGTGTGTCCGTATCTCAGTGTGGGCTATCTctctccctatatatatatatatatttatatatatata

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002338 True 1097 mRNA 0.52 5 11767284 11772145

Neighbor

gene id symbol gene type direction distance location
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding downstream 41333 11720216 ~ 11725951 (-)
AMCG00002335 NA coding downstream 55973 11708258 ~ 11711311 (-)
AMCG00002334 NA coding downstream 61589 11703336 ~ 11705695 (-)
AMCG00002333 NA coding downstream 66607 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 136375 11629149 ~ 11630909 (-)
AMCG00002337 NA coding upstream 1451 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 15357 11787502 ~ 11790736 (-)
AMCG00002346 NA coding upstream 28296 11800441 ~ 11803744 (-)
AMCG00002352 NA coding upstream 31909 11804054 ~ 11805639 (-)
AMCG00002347 NA coding upstream 43182 11815327 ~ 11821431 (-)
G122551 NA non-coding downstream 48315 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 51139 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 138849 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 317493 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 357698 11407524 ~ 11409586 (-)
G122632 NA non-coding upstream 72247 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 74936 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 85246 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 90758 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 271170 12043315 ~ 12045019 (-)
G122597 NA other downstream 32960 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 82195 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 239366 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 920083 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1487300 10269889 ~ 10279984 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 76325 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 97462 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 223683 11995828 ~ 12006352 (-)
G122862 NA other upstream 1256052 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1877082 13649227 ~ 13654247 (-)

Expression


Co-expression Network