AMCG00002340


Basic Information

Item Value
gene id AMCG00002340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11793620 ~ 11797734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002340
GTCGAGGCCTCGGTGTTTCCTGACTGCCGCAGCCCGGCTGGCGACGGCGTAATGGCGGCCGTAGAAGCAAGGTTGCCTGGTGTGCCGGCGGATGGCATCCTGATCGGGGATAAGAAGTACTCCGGGGTGACGTTGACCCTGGATAACTGCCTCCTTTCCCCGGAGCGTCTGGAGAGGACCCCCTCGTCGGATCATGGCCTTGCCCCCGACACGGAGGAGCAGCTGCGGCGTGAGGGCTGCGAGAGGATCCAGGCGGCGGGAATACTACTGAGACTGCCGCAGGTTGCCATGGCGACAGGGCAGATTCTGTTCCAGAGATTCTTCTACTGCAAATCCTTCATCAAGCACTGCGTAGAgtcgGTGGCGATGGCCTGTGTTCACCTGGCCTCTAAGATCGAGGAGGAGCCGCGGCGCATCAGGGATGTCCTGAATGTCTTCCACCGGCTCCGACAGATACAGGAGGGGCGGCCTCAGTCCCCGCTGTCCCTGGACGCTGGGTACATCGCTCTGAAGAGTCAGGTGATCAAGGCTGAGAGGAGGGTCCTGAAGGAACTAGGCTTCTGTGTGCACGTCAAACACCCACACAAGatCATCGTGATGTACCTGCAGGTGCTGGAGTGTGAGAAGAACAGCAAACTGGTGCAGATGGCCTGGAACTACATGAATGACAGCTTGCGGACAGATGTGTTCCTGCGGTTCAGTGCGGAAAGCGTCTCCTGTGCCTGTATCTACCTGTCGGCACGCACACTGCAGCCCAACGGTACGCCAAACTTAGTGGACCCCCCTGCCAGCTTCTCCCCAGCATCCAAGACAGcatCCCCGGCAGCGGGGGCAGTGTCCCGGGACTCCCCCCTATCAGTCCAGGCCATGAAGAATGCTCGACGCCAGCTGCAGAACGGGCTGGACCGTCCCCGACAACCGCCCAGgaGAGACAGGCTGAGCCACAGTGATGAGAGGAGAGAAACTCACTCTATCTCACCCCCACACAGCCCCAAACGcagGCGCAGCCGCAGCGTGTCGTCTCCTGTgcgctcctccagctcctccctctctccgggCCATCGCAGGAGACTGCCGGAGAGGGACAGGGAccgggacagggacagggacagggagagagccagggagagggagaaggagcggcagagagagagggagcgggagcGAGGGAGGAGAGAGCGGTACACAACACAGCGCAGATGATCATGAAAAAgccagggacagacagagggacagcagGGTGGGATGTGTCGGGGACCAGGCTGCCCGGTGCaccgcagtgtgtgtgtaaatatgaatatatatatttttgcaccATTTCTGTTAATTCCAATAAGTTTAACATTCCAGTGGAGCTCCAGTTACTTCTTGTGTACACCTGGGGTAAAtagactgtacacactgtacacctggGAAAAATACTGTACACCTGGGCTATATAGACTGTATTGGCCTGACTGTCAGTGTGCTCCGGGCCTGGGGGCAGTGAGGCAGGCTGTGTCATTAGTGCTGATAGTGTTAATTATcccaatgtgtgtgtttggggggcaGTGCTTTTGTTGCCAACGCTGACATTGTGACTTTGATgtatttggtgtttttcagtttttttaataaagagac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002340 True 1623 mRNA 0.57 10 11793620 11797734

Neighbor

gene id symbol gene type direction distance location
AMCG00002343 NA coding upstream 750 11791414 ~ 11792870 (+)
AMCG00002330 NA coding upstream 27029 11751651 ~ 11766591 (+)
AMCG00002332 NA coding upstream 52573 11738324 ~ 11741047 (+)
AMCG00002329 NA coding upstream 55507 11731605 ~ 11738113 (+)
AMCG00002324 zbtb17 coding upstream 148836 11636813 ~ 11644784 (+)
AMCG00002341 NA coding downstream 550 11798284 ~ 11800507 (+)
AMCG00002342 atad3a,LOC103357928 coding downstream 7964 11805698 ~ 11813640 (+)
AMCG00002344 NA coding downstream 40126 11837860 ~ 11845019 (+)
AMCG00002354 NA coding downstream 107139 11904873 ~ 11905805 (+)
AMCG00002353 NA coding downstream 121932 11919666 ~ 11922866 (+)
G122549 NA non-coding upstream 76919 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 107302 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 249999 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 260160 11530886 ~ 11533460 (+)
G122470 NA non-coding upstream 265522 11525232 ~ 11528098 (+)
G122592 NA non-coding downstream 58744 11856478 ~ 11857326 (+)
G122737 NA non-coding downstream 306936 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 330646 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 332144 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 575067 12372801 ~ 12373031 (+)
AMCG00002339 NA other upstream 78248 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 99455 11688600 ~ 11694165 (+)
G122482 NA other upstream 162728 11629012 ~ 11630892 (+)
AMCG00002311 ttll10 other upstream 414052 11365614 ~ 11379568 (+)
AMCG00002310 NA other upstream 433780 11357552 ~ 11359840 (+)
G122582 NA other downstream 37705 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 96739 11894473 ~ 11898701 (+)
AMCG00002360 NA other downstream 214237 12011971 ~ 12016084 (+)
G122746 NA other downstream 336052 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 1234025 13031759 ~ 13051971 (+)

Expression


Co-expression Network