AMCG00002342 (atad3a,LOC103357928)


Basic Information

Item Value
gene id AMCG00002342
gene name atad3a,LOC103357928
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11805698 ~ 11813640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002342
ATGGGCACAGTACGGAAGCATGAGGTCAACAGGTTGGCCAGAGACAGGTTGACCAGGATCAGGAAATGGGCCTATGTAGTGTCAGCCAATCAGGATGGCGAATCCTGTGCGAGGGGCGGCTCTGCCTTCTCCGAGAGGCGGCTGCGCAGAGGACTTTTGAGTGACACGCGTGTTTCTGTAGTGTGGGAGCCGCTCTGTCCGCCTGGACTCCTGGACAGCCAGAACCGTGCTGACCCATCCAACCGCCACACCATGTCCTGGCTATTCGGTCTGAATAAAGGGCAGCCCAGCCCGCCCCCGGACCTGCCGGTACCTCCTCCCCCCCCGCCACCGGCCGGGGGATCCGGAGGGAGCGGGGGGGATAAACCCAAGGACAAATGGAGCAATTTCGACCCCACCGGACTGGAGCGGGCGGCCCGAGCGGCCCGGGAGCTGGACCAGTCCCGCCATGCAAAGGAGGCCTTGGACCTGGCCCGTCTGCAGGAGCAGACTGTGCAGCTGGAGCACCAGGGCAAGCTGAAGGAGTATGAGGCAGCGCTGGAGCAGCTGAAGGGAGAACAGATACGCATCCAGGGGGAGGAGAGACGGAAAACAATTGCAGAAGAGAGCAGACAGCACCAAGCTaGGGCACAGTACCAGGACAAGCTGGCCAGGCAGCGATATGAGGAGCAGCTGAGACAACAGGTGAGGGCAGGGGAGGGAATCTctgtgtgtctgtacacAGCAACGATCGAGCATGAGATGGAGCTGCGCCAGCGGGGGGAGCTGCAGCGCGTGGAGGCAGAGGCGCGAGCACGGGGCCGCGTGGAGCGGGAGAATGCCGACATCAACCGAGAAAACATCCGCCTACGCGCTGCtgagcacagacagacagtactGGAGTCCATACGgacgGCGGGGGCGGTGTTTGGAGAGGGGTTCCGTGCCTTTGTGTCAGACTGGGATAAAGTCACAGCCACGGTGGCTGGGCTGACATTGCTGGCAGTGGGAGTGTACTCTGCACGGAATGCAACGTCGGTGGCAGGGCGCTATATCGAAGCACGGCTGGGCAAGCCTTCCCTGGTGCGCGAGACGTCACGCATCACTGTGGCGGAGGCCATCAAGCACCCAGTCAAGgtGGGCAGGCGTCTGGCCAGTAAACCTCAGGATGCTCTGGAGGGGGTGGTGCTCAGTCCGGTACTGGAGGAGCGTGTGCGGGACATTGCCATAGCCACGCGGAACACCCGTCAGAACCACGGGCTGTACCGGAACATCCTGATACTCCTGCTGTTTGTAGATGAAGCTGATGCATTCCTACGCAAGAGATCCACGGAGAAAATCAGTGAGGATCTTCGAGCCACTCTCAATGCATTCCTGTACAGAACTGGAGAGCAGAGCAACAAgtTCATGCTGGTCCTGGCCAGTAATCAGCCTGAGCAGTTCGACTGGGCAATCAATGACCGCATTGATGAGATCGTCAACTTCGCCCTGCCGGGGCCAGATGAGCGCGAGCGGCTGGTCAGGCTCTACTTTGACCGCTACGTCTTGCAGCCAGCAGCACAGGGCAAACAGCGGCTGAAGGTGGCGCAGTTCGACTATGGCAAGAAGTGCTCAGAGATTGCTCAGCTGACCGAGGGCATGTCCGGCCGTGAGATCTCCAAACTGGGCGTGGCCTGGCAGGCGGCTGCGTACTCCTCGGAGGATGGAGTTCTGTCTGAGGCGATGATTGACGCGCGTGTTTCTGATGCCGTCCGTCAGCACCAGCAGAAGATGGACTGGCTGCAGAGGGAGCGTGTTATGGGGGGCGGTGAGGCTGGAGGCAAGCCTGGCTTCACCCCCCCGCTGCCAGAGGGAACCCTAGTCTGA

Function

symbol description
atad3a Enables identical protein binding activity. Involved in antiviral innate immune response; negative regulation of apoptotic process; and regulation of cell growth. Located in mitochondrion.

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 3-A-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K17681 ATAD3A_B; ATPase family AAA domain-containing protein 3A/B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002342 True 1845 mRNA 0.61 15 11805698 11813640

Neighbor

gene id symbol gene type direction distance location
AMCG00002341 NA coding upstream 5191 11798284 ~ 11800507 (+)
AMCG00002340 NA coding upstream 7964 11793620 ~ 11797734 (+)
AMCG00002343 NA coding upstream 12828 11791414 ~ 11792870 (+)
AMCG00002330 NA coding upstream 39107 11751651 ~ 11766591 (+)
AMCG00002332 NA coding upstream 64651 11738324 ~ 11741047 (+)
AMCG00002344 NA coding downstream 24220 11837860 ~ 11845019 (+)
AMCG00002354 NA coding downstream 91233 11904873 ~ 11905805 (+)
AMCG00002353 NA coding downstream 106026 11919666 ~ 11922866 (+)
AMCG00002356 NA coding downstream 119985 11933625 ~ 11959805 (+)
AMCG00002362 NA coding downstream 153735 11967375 ~ 11983436 (+)
G122549 NA non-coding upstream 88997 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 119380 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 262077 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 272238 11530886 ~ 11533460 (+)
G122470 NA non-coding upstream 277600 11525232 ~ 11528098 (+)
G122592 NA non-coding downstream 42838 11856478 ~ 11857326 (+)
G122737 NA non-coding downstream 291030 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 314740 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 316238 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 559161 12372801 ~ 12373031 (+)
AMCG00002339 NA other upstream 90326 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 111533 11688600 ~ 11694165 (+)
G122482 NA other upstream 174806 11629012 ~ 11630892 (+)
AMCG00002311 ttll10 other upstream 426130 11365614 ~ 11379568 (+)
AMCG00002310 NA other upstream 445858 11357552 ~ 11359840 (+)
G122582 NA other downstream 21799 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 80833 11894473 ~ 11898701 (+)
AMCG00002360 NA other downstream 198331 12011971 ~ 12016084 (+)
G122746 NA other downstream 320146 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 1218119 13031759 ~ 13051971 (+)

Expression


Co-expression Network