AMCG00002345


Basic Information

Item Value
gene id AMCG00002345
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11864614 ~ 11869352 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002345
TGTCTCAAATTctcaaaaactatttttattggCATGAGTTTTCACAGCGTTTACAGACccagaaagaataaaatcaaactaaatgtcTCCCCCTATCGGACACCAGATCTGTGGTGTATACACAGTATTGTGGGGGAGTTTACAGCTTCGTACGTCATACCCGAATCAGGTGGAGCAGGAAAAACCTTCCTCGGCTTCGGATTGGTCAGATCTGTCATAGACCCCGCCCCACCGGCCGCCATTTTAGAAACCAGTCAGTTGTGCGGATGGAGAGTTGGTCGGTCTTTAGTTTACATTCGGGAGAACCTGCGTTTTAAACAGTCGTTCGGCTTGTTGCACAGGAGCAGAGCAAGATCGTCCTCTCGTCTCCTGGTCCCGGCTCTACCTCTCCTCTCACCTCACAAacaggttctctctctctccctccggTGTGTCGGGTTTCGCCGAGTCGCCCAGAAGTCGCCCCACGGCCCCGAGATGCCGAGTCACCCGCTGCGTGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGCAGCATGGAGGCGCACAACATCCTGAGTGTGACGTACAGCGCAGTCGCACAAGCCCCGGTGCCGCACGGAGGTCTGCGGAAAGGACCGAGCCCCCGTAACGGCCTGGCCCCGGCAGCAGCGCTCGGACACCCGGACGACGGCGGAGCTGGGCAGCGCTGTGGCTCGGGAGCCTGCTCTGACCCTAcgtgTAAGCGTGGTTTTGACGTGTCCTCCTTTGGGACGGGCACCCATGTGAAGCTGCCCGGGCCGGCTCCAGACAAGCCCAACGTGTATGACTTCAAGACCACCTATGAGCAGATGTACAATGACCTGGTCCGCAAGGACAAGGAGCTGTTCCAAAACTGCAAGGATCAGTTTGACCTGGTGAtcacctgtgaggagagagtGTACGACCAGGTGCTGGAAGACCTGAACTCCCGGGAGCAGGAGACGTTCCAGCCGGTTCACGTCATAAATGTCGACATCCAGGACAACCACGAGGAGGCAACGCTGGGAGCCTTTCTCATCTGCGAGCTGTGCCAGTGTATACAGCACACTGATGACATGGAGAATGAGATGGACGAGCTGCTGCAGGAGTTTGAAGAGAAGAGCAGCCGGCCCTTCCTGCACACAGTCTGCTTCTATTGACAcgacacaaaacacacacacacacacacacacacacacacaacgcagCAGTCTGCTTCTACTCACACACAATTCAACCCACGGTCTGCTTCCACTGACATGCACATACAACACAACCCACAGTCTGCTACCAGTGAGACACATACACAATGCAACAGTCTTCTTCTACTGACCTACAGCGCGCACAAAACTCACTGTCTGCTTCTACTCACacgcaacacacacatacacacagggcGACACAGTCTGTTTCTACTTGTACACAACACACTCAAACTAGCACATACTATCTCTCATAAgcgcaacacacacacactcaccctcaCACACAGTCCATTGTTCACAGGAGCTCAGTGTGTCAGGTGGCTCTCAGCAGGGGGCCTGCGGTTAGTCCTGACCCCAAACTgtaccccccccctcctcctcagcAGCCCCACCAGCACTGTACTAACCCGAGGAGGGGTGGCGCTGCGGTTCAGAACAGTAATGATTGCGATCTTGATGCACCTCATAGTTACAAGAAAGCAGAACTCAATAGTTCTGctttacaattatttatctttttttttttttaatttgaatttttatgatgatgatgatgatgatgatgaattgCGACTCCTGAGTCCTTAATGCCTGGattcttttttttagttttgttttttttcccttccccatttggtaatttaaaaatggagaaaaaatgcagaaagaaagTTGAGAATTTGCAGTTTGAAACGGTGTCTGAGTCAGGAGCgcctgtatgtgtgtctgtaaatatataaatataggaaTAAATATCCAGAGGAGCTGCGGCCTGCTGTCTTTGTGGGGGGTTTGGGGTAAGGGTTGTCTGGCTGGGTGGTTTAAGAAGCAGTAGGGTGGTCTGTGGTTGGTGCGTTTCctataatttacttaatttattctCCCAGGTGTGTCTTTGGTTTAtttcaatcaattaatctgtCAATAAACCGACCTTTATTCAGTACAGCATCCAGGAATTGTCACAGAGCGGTGCAGGACTTGTGCGCTGGAGCAATCAGTCTGCACAGGAGCTCCTGCAATCTTGAACCACCAGGGGGAGTTCAATGCCTGCAATACCTTAGACACACCAGAGGGAGCTCAGTTTAGATTTATTAGATTAGATTTATTGGCATGACCTGCGTGCTCTGGTGTTGCCAaagttttaaacaaaaccaaaagaagTGTTACATTACATTGAAAATACAGCACAGAGTAACACAAAACagggatgtgaaaatacaaacatggaATTAAACAAGACATCGACTGCTTTCTCAGTTCCTACACACTCTCTCAGGTTGTGGCAGAGGTACCGTCTGCTCTTCCTCTCCCAGTATGATGGATAATTTAGTGTGGTCTAGGGGGAGTTTCCATTCTTGAAATTGGATTTTGGATTTTGTATGTCAG

Function

GO: NA

KEGG:

id description
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002345 True 2592 mRNA 0.49 6 11864614 11869352

Neighbor

gene id symbol gene type direction distance location
AMCG00002349 NA coding downstream 30791 11830472 ~ 11833823 (-)
AMCG00002347 NA coding downstream 43183 11815327 ~ 11821431 (-)
AMCG00002352 NA coding downstream 58975 11804054 ~ 11805639 (-)
AMCG00002346 NA coding downstream 60870 11800441 ~ 11803744 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding downstream 73878 11787502 ~ 11790736 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding upstream 12721 11882073 ~ 11892699 (-)
AMCG00002358 NA coding upstream 36558 11905910 ~ 11913015 (-)
AMCG00002359 NA coding upstream 43758 11913110 ~ 11918100 (-)
AMCG00002367 NA coding upstream 186289 12055641 ~ 12060552 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding upstream 212759 12082111 ~ 12096642 (-)
G122621 NA non-coding downstream 558 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 5289 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 16422 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 18943 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 145645 11718530 ~ 11718969 (-)
G122726 NA non-coding upstream 173963 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 326568 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 1131489 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 1182674 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 1197869 13067221 ~ 13067627 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 9723 11848470 ~ 11854891 (-)
G122597 NA other downstream 130290 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 179525 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 336696 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 1017413 10837804 ~ 10847201 (-)
AMCG00002351 NA other upstream 255 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 126476 11995828 ~ 12006352 (-)
G122862 NA other upstream 1158845 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1779875 13649227 ~ 13654247 (-)
G123263 NA other upstream 3071908 14941260 ~ 14946311 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020660 ssu72 coding NC_007133.7 CM002906.2 359273 ~ 367569 (-)