AMCG00002346


Basic Information

Item Value
gene id AMCG00002346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11800441 ~ 11803744 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002346
TCGGAAGCCACCGTACAGGATCCCTCCTCCTCGCTGTGTAGAACCCGGAAGCAGTGCTGTGGAGTGTTGGcgaaaataaacataaacacgCAACGACAAAGCTCCATATTGTTCTCTcaatagtaatattaatattgatagtcatctttgttatttaaattgtaacCACGGGCCGGGCCGCTGTCTGGTAGCGGtgatGTCCCGGAAGCAATCAGTGAAAGGGGGTCGTGGGAACAAGAAGTGCGATGTGGAGAGGAAGCGAGACGAGCGGGCAGCTCGCAGGGCATTGGCCAAGGACCGCAGGAACCGCCCCCCGGGGGAGGGACCAGAGGAGGAGTTTGTCAGTTTCACCAATCAGCTGCAAGCACTGGGGCTGAAGCTCAGAGAGGTCCCAGGAGATGGtaaCTGTCTGTTCCGCGCTCTGGGGGACCAGCTAGAAGGACACTCACGGGGTCACCTGCGTCTGCGCAGACAGACGGTGGAGTTCATGCAGACGCACCGGGCAGATTTTGAACCTTTCCTGGAGGAGGACATCCCCTTCACGCAGCACTtgtccAGTCTTGCAGTGCCCGGGACGTTTGCAGGCAATGACGCCATCGTAGCGTTTGCCCGCAGCCAGCAGGTCCGTGTGGTCATACACCAGCTCAACACACCTCTGTGGCAGATCAATGGTTCAGAGAAGCCAGTATGTCGTGAGCTGCACATCGCATATCGCTATGGTGACCACTACGACAGCGTCCGGCCAATTGGGGACAACTCAGAGAGCCCCGCCCAGCTCTGCAtcgagactCTATCTCGTGCCGGGGGACAGTGTGAGTCTCAGTGCTCCCAGGCCAGCAGACAGATGGACAGGAATACAACACATTGCACgGACAATGGTGATGGACGGAACTGCAGTGACCTCAGTGCTGAAGCTCAGCCCTGTGCAGCAGTATGGGAGGAGCCGGACTCTGATGCCCCACCATGCCCTGCCCTATGGGAGGAGTCAGGGACAGGGACACGCCTCTTTGGCCCAGTGATTCAGACAGAACAAAGTGCCAGCAAACCAGTGGGGCAGCCACCAGGGGACAGCCACACAGCTAagctttcTAACAGGCAGAGGAAGGAGCAGCAGAGGCAGGAGAAGAAGCGCCGCCAAGaggagagacacagacaaaaGGCGCTGGAGAGCCGGGCTACACAGAACCAGGGCCAGAACCTCTCGGACCAGAACCAGCCCGTCACCTTGGTGCGAGCCCTCAACACGCTCAGCATCTAGCCCAGGCTGGATTGGACTGGAATAGATAAGACTGCACCTGACTGTGCAGgaatggactggactggactggacaggaCTGGACAGGAATGGACTGTGCCATATTGAACTGTAACCTCATTATACTGCAGACTTGCTCTGAGacagtcactgtgtgtgtgtgaatgtgtttgaGCTAGTGTTTGAGTACGACAGCTGGcaagggtgagagagg

Function

GO: NA

KEGG:

id description
K13717 OTUD3; OTU domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002346 True 1469 mRNA 0.56 9 11800441 11803744

Neighbor

gene id symbol gene type direction distance location
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding downstream 9705 11787502 ~ 11790736 (-)
AMCG00002337 NA coding downstream 16803 11773596 ~ 11783638 (-)
AMCG00002338 NA coding downstream 28296 11767284 ~ 11772145 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding downstream 74490 11720216 ~ 11725951 (-)
AMCG00002335 NA coding downstream 89130 11708258 ~ 11711311 (-)
AMCG00002352 NA coding upstream 310 11804054 ~ 11805639 (-)
AMCG00002347 NA coding upstream 11583 11815327 ~ 11821431 (-)
AMCG00002349 NA coding upstream 26728 11830472 ~ 11833823 (-)
AMCG00002345 NA coding upstream 60870 11864614 ~ 11869352 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding upstream 78329 11882073 ~ 11892699 (-)
G122551 NA non-coding downstream 81472 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 84296 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 172006 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 350650 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 390855 11407524 ~ 11409586 (-)
G122632 NA non-coding upstream 40648 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 43337 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 53647 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 59159 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 239571 12043315 ~ 12045019 (-)
G122597 NA other downstream 66117 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 115352 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 272523 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 953240 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1520457 10269889 ~ 10279984 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 44726 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 65863 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 192084 11995828 ~ 12006352 (-)
G122862 NA other upstream 1224453 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1845483 13649227 ~ 13654247 (-)

Expression


Co-expression Network