AMCG00002351


Basic Information

Item Value
gene id AMCG00002351
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11869607 ~ 11872862 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002351
ATGCCGGGCTGGCTGCGAGCCCTGCTCCTCGCATGTGCCGTGCTGCTCGGCGCTTTCCGGGCTTGTGGAGGGGCAGGGCCAGCCGGCAGGGATTCGGTGCCACAGGCGCCCTGGAGTGCAGGCTTGCAGGGAGCTGGCCTGTGGGAGCTGGGTGGGGTGCACAGCAAGCGGAAGAGAGATGAAGATTCATTGCTGTTACCATCAGAATCATCAGCCACCAGCACGCCAGCACTGGagcggggagagggagaagcaGCACTGACCCACACCAGCCACTGGGGCGAGGACCAGCACAGCAGCAATGACGATGATGGTGATCGAATAATGGCCCCAGGCTCCACGGCTGCAGAGCTAAGCCATTCTGGGTATAGCAGCTCCAGCAGGGTGAGAAGGCGGGGCAGCAGTGAGGGCATGGCGGTGGGGATGGTGTGTGTGTACCGTGTGAGCAGGGGCAGGGCGGtgggtggggttgggggtggaAGGCTGTGTTATAGGGAGCAGCAGCACGGGTTTGAGTGCCGGCAGGGGGAGTGCCAGGTGGTGCGGTCCTCGAGGCCAGGGGGGCTGGTCGCCAACCTGCTGAACAACGGTAGCGTGCTGCTGCAGTGGGGGGGCGCGGGACAGGGGGAAGTTCCAATGGAGCCCAGCCAGGGGCAGAGAGCTTGGGGGCAGAGCAGTGAGGGGCAGCGGAAAGTAGAGGGTGCACAGGTCGGGCGCAGGGGGACTTTGTGGCGGGCGGGGGGGTTCTGGCTCAGCTGCTCGTGGAATGGTTCATACTCGGAGCTGCAGTGTGATGGTGTAGCACTGGGCGCCGGCTGCCGTGACTTTCTGCTGACCGAGCTGCAGGACAGTGTGCCATACCGCGTGTGCCTGCGCCCCGCCTCCGGCAACAGCCCCAGCAGCACAGACTGCCTGGAGTTCTCTCTGCGCCCCCCTGCTGTGCAGGAGCTGGTAGTGGCCATGACGGCGGTGGGCGGGGCCATCTGTGTGATGCTGGTGGTCATCTGCTTGCTG
>TU153768
GGGGGGTTCTGGCTCAGCTGCTCGTGGAATGGTTCATACTCGGAGCTGCAGTGTGATGGTGTAGCACTGGGCGCCGGCTGCCGTGACTTTCTGCTGACCGAGCTGCAGGACAGTGTGCCATACCGCGTGTGCCTGCGCCCCGCCTCCGGCAACAGCCCCAGCAGCACAGACTGCCTGGAGTTCTCTCTGCGCCCCCCTGCTGTGCAGGAGCTGGTAGTGGCCATGACGGCGGTGGGCGGGGCCATCTGTGTGATGCTGGTGGTCATCTGCTTGCTGGTTGCCTACATCACTGAGAATCTCATGAACcccaataacacacacacacacacaccacacacacatacgcacacgcCACACACGCACTGTTCGCATAGTcatcctgcacacacacacgcacacgcacatgatgacacactgactcactgacacagtGATGCTGCAGGCAAACTCGCCCACACTGACACTAGTgctaacacactgacacactgacgtACAGTGTGTGAGAACCAGAGAGACTGCAGGAAGTGAGGTCTCAGGCCTGGACTCGAGTAGAGGGGAATACTGCAAAATACTGCACAATACTGCACAAAACTGCAGCAATGATTGGCctcctcaaaatataatttagataCATTGCAATAAAACgaacactttaaatacatttttgaaatatatctAAAACACACgctgtgttgtgttgatgtAGGTGGAGTGTCTGAGTACACCTCACATACAGGGGCGTCTCACAGCCTGGCCTTTGGAAAGTGTGTTCAGTATATCttccattttgtcattttctcaATATTGCAATGTGTGATGCCTCACTGTGTCTCACTGTGGCTCAGTGTATatgtcagtgcatcagtgtgtgtcagtgtggtagGTTGGTCTTGTCCATAGACAATAGTATAGAGCAGGACCAGAGTCAGCTATATACTGATAGTACACAGTTCATGTGTTGTATCTAGCTTCACACAGGGTAGTCTAACACTGTGctatagacagatagatatgtAACTGATAAGTGTAGGTAATTAGAGAATAGATAAGTAGATTCATAATTAGTTAAGTAAATATATAAGGAAATAAGAGTATATAGTGTCTATATACATTAGAACACAGTAGATAGATAAGTATATATACAGCTAGAGAGATGAGTATAGAAATTGATTGATATATAGATAACAGTGTCGATCTACAGTCCAAGTTCATTGTGATTGGGTTCTGGTTTGTaaaaggacagacagacagcagcctgggCTGTGCTGGGACCCTGTGTGGATCCTCACAGACCAGTGTGTGCAGGGTCTCCAGTGTGTGCAGCCGAGAGGTGCTGATGCTGTGGCTCACTGTGCCACTTTCAGActgtgtgttcctgtgtgtcagtgtgtaaatcagtttgtgtcagtgtgattGGATTAGtctgagtgtgtcagtgtatccaTGTGCCTGTTTCAGAGTGTCAGAGTGTGTCAGTGGAAATCCAAGTACACTGTGAGCCCTGCCccatgtcagtgtgtcagtgtgagtgtccAGCGCACTGTGAGCCCTGCCCTGTGACCTGTCCCCATACAGCTCAACAGGCAGACTGAACTCGTGACAATCCTCCCCCATCATACCCTGATGTGTATATAGCTATAGATATTGATGTAGATATAGAGATAGaggtatatattgtttactgtatattgtatattgtacatGTGGAGCCGACTCCCTATTTCTGTACCTGACCACACAGCCTTCACAGTAAATAAAGGACATTGCTGCTGG
>TU153773
cacacacacacacacacacacactctctcccatCGGAAATGGGCAGGCAGCGCCgtcagcgagagagagagaaagagtccAAAAATAACACAGCGCCTTCCATTGCTTTCTCTGTTGAGACGCCAGACCGTCTCCTGCTTTGTCGCAGTAGCCTAGCACAGTCTCCAGGACCGGGCAGCGGCGGTGTGCGCAGCGCAGGCGGATCCGCAGCGGCGGGTGTGTGTCCTCTCCGCTCCCCGGCCACTCTGGCGGCTTTCTGCGGCGAGTGGCGGCGCTCTATGCGGGCGTACGGCTGCTAGGCGGCGCCATGCCGGGCTGGCTGCGAGCCCTGCTCCTCGCATGTGCCGTGCTGCTCGGCGCTTTCCGGGCTTGTGGAGGGGCAGGGCCAGCCGGCAGGGATTCGGTGCCACAGGCGCCCTGGAGTGCAGGCTTGCAGGGAGCTGGCCTGTGGGAGCTGGGTGGGGTGCACAGCAAGCGGAAGAGAGATGAAGATTCATTGCTGTTACCATCAGAATCATCAGCCACCAGCACGCCAGCACTGGagcggggagagggagaagcaGCACTGACCCACACCAGCCACTGGGGCGAGGACCAGCACAGCAGCAATGACGATGATGGTGATCGAATAATGGCCCCAGGCTCCACGGCTGCAGAGCTAAGCCATTCTGGGTATAGCAGCTCCAGCAGGGTGAGAAGGCGGGGCAGCAGTGAGGGCATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002351 False 1014 mRNA 0.65 2 11871104 11872276
TU153768 True 1773 lncRNA 0.47 1 11869607 11871379
TU153773 False 722 TUCP 0.64 2 11871862 11872862

Neighbor

gene id symbol gene type direction distance location
AMCG00002345 NA coding downstream 255 11864614 ~ 11869352 (-)
AMCG00002349 NA coding downstream 35784 11830472 ~ 11833823 (-)
AMCG00002347 NA coding downstream 48176 11815327 ~ 11821431 (-)
AMCG00002352 NA coding downstream 63968 11804054 ~ 11805639 (-)
AMCG00002346 NA coding downstream 65863 11800441 ~ 11803744 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding upstream 9211 11882073 ~ 11892699 (-)
AMCG00002358 NA coding upstream 33048 11905910 ~ 11913015 (-)
AMCG00002359 NA coding upstream 40248 11913110 ~ 11918100 (-)
AMCG00002367 NA coding upstream 182779 12055641 ~ 12060552 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding upstream 209249 12082111 ~ 12096642 (-)
G122621 NA non-coding downstream 5551 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 10282 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 21415 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 23936 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 150638 11718530 ~ 11718969 (-)
G122726 NA non-coding upstream 170453 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 323058 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 1127979 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 1179164 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 1194359 13067221 ~ 13067627 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 14716 11848470 ~ 11854891 (-)
G122597 NA other downstream 135283 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 184518 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 341689 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 1022406 10837804 ~ 10847201 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 122966 11995828 ~ 12006352 (-)
G122862 NA other upstream 1155335 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1776365 13649227 ~ 13654247 (-)
G123263 NA other upstream 3068398 14941260 ~ 14946311 (-)
G123585 NA other upstream 4963294 16836156 ~ 16839722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location