AMCG00002355


Basic Information

Item Value
gene id AMCG00002355
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11894473 ~ 11898701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002355
CCTGTATCGTACACCACCATGTGAAATCGCGGCCCTGCTGAACAGCCTCTCTCCCCGATTCGCCCTCCTCCGCGGTTGCGCAATCTTTATTTACTGTTCGGGACGGACGTTGTTCTCGGTTCTCGCGAGAACTCCTCATTTCCTTTCTCTGCAAGAGTCCGCCAGCGAATTCTCGCGGTACTTGCTGTGGAAAATGTCCGAAAGAGAGCTGGGGAGGAAGTGGGACCGCTGCCTTGCGGACAGCGCTGTCAAGCTCGgggccGGCCTCGGGTTGGGAATTGTGTTCTCGGTTATCTTCTTCAAGCgtAGGGCATGGCCGGTAGCATTTGGTGCCGGGGGGGGTCTTGGCATGGCATACTCTAACTGCCAGCATGACTTCCAGCAGCCATACCTGCTGCATGGGCGCTATGTCAAGTCGTCCTGCTGGTGTGGTGTCAGAGCCAGAAACAGCACCTGCAACCCC
>TU153790
AGTCCGCCAGCGAATTCTCGCGGTACTTGCTGTGGAAAATGTCCGAAAGAGAGCTGGGGAGGAAGTGGGACCGCTGCCTTGCGGACAGCGCTGTCAAGCTCGgggccGGCCTCGGGTTGGGAATTGTGTTCTCGGTTATCTTCTTCAAGCgtAGGGCATGGCCGGTAGCATTTGGTGCCGGGGGGGGTCTTGGCATGGCATACTCTAACTGCCAGCATGACTTCCAGCAGCCATACCTGCTGCATGGGCGCTATGTCAAGgagcaGTAgtgtaggaggaggaggagctctTTTTCCTAGTATCGTTGCCCCCTTTGCAGTGTGCTTTGagcactgagtgtgtgtgtgtgtgtgtgtgtgtgtgggtgagtgagtgagtgagtgagtgcgcTCTCTTGTGTACAGAGCAGCTATTTAATAATAAAGCGTGTTGGTGAGCggtctctgtctgtttctgtctctgtctcaatGAAAAGCAGCAACGCTGGACAGACCAGCTGCACTGAGGATAATCACAGAAGGTTTCTCACAGCCCCACACCCTACTATCACACAACCTAAAGTCACACAAGCCTACACCACAGTGAAGTTAATGGCATAAACTATTGGGTgttataaaatgaataatcaaaCTATACAAATATTCTCCCTCTCTGTTTGTCAGTCGTCCTGCTGGTGTGGTGTCAGAGCCAGA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0098656 anion transmembrane transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002355 False 463 mRNA 0.58 4 11894473 11898701
TU153790 True 692 lncRNA 0.51 4 11894628 11898683

Neighbor

gene id symbol gene type direction distance location
AMCG00002344 NA coding upstream 49454 11837860 ~ 11845019 (+)
AMCG00002342 atad3a,LOC103357928 coding upstream 80833 11805698 ~ 11813640 (+)
AMCG00002341 NA coding upstream 93966 11798284 ~ 11800507 (+)
AMCG00002340 NA coding upstream 96739 11793620 ~ 11797734 (+)
AMCG00002343 NA coding upstream 101603 11791414 ~ 11792870 (+)
AMCG00002354 NA coding downstream 6172 11904873 ~ 11905805 (+)
AMCG00002353 NA coding downstream 20965 11919666 ~ 11922866 (+)
AMCG00002356 NA coding downstream 34924 11933625 ~ 11959805 (+)
AMCG00002362 NA coding downstream 68674 11967375 ~ 11983436 (+)
AMCG00002364 NA coding downstream 92256 11990957 ~ 11992957 (+)
G122592 NA non-coding upstream 37147 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 177772 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 208155 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 350852 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 361013 11530886 ~ 11533460 (+)
G122737 NA non-coding downstream 205969 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 229679 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 231177 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 474100 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 506241 12404942 ~ 12411141 (+)
G122582 NA other upstream 58304 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 179101 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 200308 11688600 ~ 11694165 (+)
G122482 NA other upstream 263581 11629012 ~ 11630892 (+)
AMCG00002311 ttll10 other upstream 514905 11365614 ~ 11379568 (+)
AMCG00002360 NA other downstream 113270 12011971 ~ 12016084 (+)
G122746 NA other downstream 235085 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 1133058 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 1145992 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 1226677 13125378 ~ 13129697 (+)

Expression


Co-expression Network