AMCG00002358


Basic Information

Item Value
gene id AMCG00002358
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11905910 ~ 11913015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002358
CTGCGGGTCACATGACCGCCGGTCAGCTGAGCGGCTCCGTGAAAACCCCGCAAATCCAGAGGCGGACGCGCCGCTGCGGGACTGGAAGCGTGAGTGCAGCGGGATCATCTGCCACGGAGTAACGGGATCACCCTATGCGGACTGTATTGACCCCTTGCTGACCCTTACTTAACCTGCTGACCTGCAGTGATGGGAGGGGGCGTGCTGGTGTGGGGGACGTTGGCGCTGGGTGAGAACTTCACGTCTGTCTGCCCCAACGGCTCGGCCTGGGTAATGGAGGTGCTGGGCGAGTGTTCACAGGACGGCAGGGACATGGCCAGCGTGGTGCTGGGGCTGCTGTCCATCGTCTGCTTCGGGGTCTCCAGCATACCTCAGTATGTCAGCTCGTGGCACAGTGGGAACATGGACAGGGCTCTGTCAGTGTGGTTTCTGCTGCTTTGGCTGGGTGGAGACTCCTGCAACCTCATTGGCTCCTTCCTGGCTAACCAGCTGCCCCTGCAGaaataTACAGCAATTTACTATGTGCTGAATGACCTCCTGATACTGAGTTGGTTTGCCTACTACAAGATCAGGAACCGCAATAACATCAGTGATTTTGGCAgcagCACAGCGGTGAATGCATTGGGTGTGTCTTTCCTGATTGGAGTCTCCATCTCCTCCATGCTCCTGCCCCAGACAGAGCCTCATATTGACACGGCTGCTGGTCCCTTCACCACTGAGGAGATTGTGGGCTTTGTGATCGGCTCGGTGTCCTCGGTGCTGTACCTGTTCTCCCGCCTGCCCCAGATATATACCAACTTCAAGAGGGCCTCGACGAAGGGTGTGTCGTACTTCCTGTTTGCCCTGGTGATCCTGGGTAACACCCTGTATGGAGTGAGTGTGCTCCTCAAGAACCCTGACCGCAGCCAGAGCGAGGGCAACTATATCCTGCACCACCTGCCCTGGCTGATTGGCAGCCTGGGGACTCTGAGCCTGGACATCGTGATCTCCTTCCAGTTCCTGCTGTACCGCAAGTCCCCTCAGAAGGGAGAGGAGAGCGAAGCCTTGCTGGGCAATGGCTCTGACACCTGAGAGCAGGACACTCGCGTACACACACATTCGCACAAACGCACTCTTTCTTCTGTCTGTTCTCATTCTTGATCTCCAACATTCCCAGCAGGGTCGTCAGCTCCAGGGTCCCGGCACTCCAGCTCTGTCCATGTCTGCGAgactgagtgtctgtgtgtctgataCCCGGCTCTATATTCAGTGTTTACTGTGGCAGCCCCTCTGGCAACGTCACTTGTTAGTTTATtctgaattgtattgtaatgtaatgtatacgGTATGACTGCGAGCTGCCCTGGCCTGAGGACACACCTCTGtccgctgctttatttttattacaaattatcACTTGAAGCAAAACCAAACTGATGCCTCAATGAGGGCCTGGCAGTGCTGGATGGTTTGAATTCTGATTGAAGATCTAAGGGCACTGAACTTGACTGGTATGGACACTGAGACTGGTACACTGCCGACAAACCAAAACCATTCCTACAGGGAAAAACTCACTCCCTTGAGGAGACACTGGAACTGTCTCCTTCCTTATGGACTGACAAATTATCACTGACAAGCAACTGACAGTCCTGGTGCTCAATGTGCTTATGGGTTGAACACTAACACTGACGTCTGTTGCTCATTGTCACTACAACAACACAATGTGGGATTCTTGATGGCATTAAATGACGGTTTTatgtctgactgtgtgtctctgtctagACGTGTGGGGTGAGGTGGGGGGTAAGCTGTAGACACTCCCGGCTCTTCAGGAGGGTGAAAGTTTGAAAGAGAGACTTGAAAAGAGGGAGGAAGGCAGGGAGTGGGTCTCTGTGTGTTATTGTCTGTGTTGTGAGTGAGAGAAAGTGCTGAGTTACTCTGCAAACTTAAAGTAAAGAGCTGCACAACGACCCTTCAGGATTCACAGATGCTTCTCATCGTAAGTACATTTTCTTCCTAGGGCCACTAGGTGGTGCCCACGCTGCAGCAGCATCATCACACAGTTGTACAATACAAGCTGACCAGCAGAGTACGCCACCACTAGCTCTGAGGTGCTGCAGCCTGCTCTCTGCTGAACCTGGACCTGAACAGATGGCTGGTCAGAGTTGGGGTCTGTAATGTAATTGGTCAGTTAGTGGAATTTCAAATGCACCACTTAATAAGTACAGATAGAGTCTCAGCAGTGTCTCTCTCATTGTGTCAGAGCTTCTGTGTCACAGTGTCGGTGTTGTATCTTCTCGCTGTGTTTGGTCAGTGAATCGGAGTGTCTGTGTCAGGGCTGTGTTGTTCAGGGTTTCAGTGCTGTGGACTGCATCAGTCTAGGAGTCGGTCAGTTTCCGTGTTCAGGCAGCGTTGCCTCCCTCTGACGTGCTCCTGTGCGTGAGGTGGTGCTGTGCGTTGAAAGCGGCAGCGTCCTACAGCAGACTGCCCCACCAGCTCTGGCCTGGCTCTAATTGACAGGTCGGTTTGAGTGGAGCACCTCCTCTCTGTGAGGgtgacatactgacacacacaaatgctCACACATGTATGCAGGCAGGTTACAGTGCTTTGTTCTACAGTGGACACTTTATTGGTACAGGTGTACAGTGGAGTTCTTTCTAGTCTCTATCAGCTGAAGCGAGAGTGACCGCGTGCAGGACACAAGGCACAGGGTGTGGGTGGGGCTGCACACAACAGACTGGAGGGCAGCGGGCAGTTTGTCAATCTGTCCTGTTAGAAAGAGTGAGTGGAGCTATCAAAGTGCTAGTGTTGTCTCAAAGGTTGTCTCCTCCATTGCTGGAGGGATGgaaagtgtgggggggggggact

Function

GO: NA

KEGG:

id description
K23678 PQLC2, SLC66A1, LAAT1; solute carrier family 66 (lysosomal lysine-arginine transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002358 True 2850 mRNA 0.53 8 11905910 11913015

Neighbor

gene id symbol gene type direction distance location
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding downstream 13211 11882073 ~ 11892699 (-)
AMCG00002345 NA coding downstream 36558 11864614 ~ 11869352 (-)
AMCG00002349 NA coding downstream 72087 11830472 ~ 11833823 (-)
AMCG00002347 NA coding downstream 84479 11815327 ~ 11821431 (-)
AMCG00002352 NA coding downstream 100271 11804054 ~ 11805639 (-)
AMCG00002359 NA coding upstream 95 11913110 ~ 11918100 (-)
AMCG00002367 NA coding upstream 142626 12055641 ~ 12060552 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding upstream 169096 12082111 ~ 12096642 (-)
AMCG00002377 NA coding upstream 186309 12099324 ~ 12100920 (-)
AMCG00002375 NA coding upstream 211183 12124198 ~ 12139756 (-)
G122621 NA non-coding downstream 41854 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 46585 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 57718 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 60239 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 186941 11718530 ~ 11718969 (-)
G122726 NA non-coding upstream 130300 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 282905 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 1087826 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 1139011 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 1154206 13067221 ~ 13067627 (-)
AMCG00002351 NA other downstream 33048 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 51019 11848470 ~ 11854891 (-)
G122597 NA other downstream 171586 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 220821 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 377992 11514000 ~ 11527918 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 82813 11995828 ~ 12006352 (-)
G122862 NA other upstream 1115182 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1736212 13649227 ~ 13654247 (-)
G123263 NA other upstream 3028245 14941260 ~ 14946311 (-)
G123585 NA other upstream 4923141 16836156 ~ 16839722 (-)

Expression


Co-expression Network