AMCG00002360


Basic Information

Item Value
gene id AMCG00002360
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12011971 ~ 12016084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002360
ACTGCTGTCTCCGCGCATTGGATAAGCGCGTATTCGtcctggagcagcagcagcaggcaaaGTCCATCTTGCACCACATCAACATCTCGGAAATCAAGCAGCTTcctttggtttattttggaCATCTGAGAAAATCATGGGAAGGAAAGATGCGACTGCTGCCAGGCTTCCAGTTGATCAATACCGCAAACAAATCGGAAAACAGGACTATAAGAAAACCAAATCTGCCTTAAAAGCAAGCAGATTAAAAGCAGAAGCTAAGAAAAGTGCCCTGGGAATACGGGATATTGTTCTTATCCTCATGGCTGTGCTGGTATTCCTGGTGTCTGTATATGCTTTTTTCTACCTGAAATTGACCACAGAAATGGACTTGGACCTGGATGTGGAGTAAAAGCCGCCCTCCTTGAATGCTGCCTGGCTCTCAGCAGACTCCATCGCCCCCTCGGTCTTGACTGGGCAGAGCCAGAGGAGATGAAGACTCACTGTCCTTTTCAGAGTCCCAGTGCATCGCGCTTCATTCACCACGGCTCATAAAAACAGGCTCCCTGCTGTGTGGCCTACCACACTTCCACTGCACAAGAAGGGCTGCGCATGGTGGATGGGCATCATAAACATCTGACCTAAAAGGGGAATGAAAGAATGACCGGATCGACAGGGACAGCAATCAGACTCGCAAGTTACAGACAGTAACTGCTCTGGACGGCATCGGTAGTTCTGTGTTGTTTAGGGTGTTCATGATGTTTAATCACTCAGAAGCACCATTCCACTATATTTGTGTTATTCCAGATATTTTTAGGTGGcgtgcaatcaaatgttttcaaaaccaaaaaagcacaATCTCATTGTCCTGATTTGGTACTGTTATATTGTGTAGGGACTTACGATGCTGATCTATAACACATTGTcttactttcatttaatttcacatgcTTTGGGAACAAAAATAATGAGGAGTGAAAGTTTTACCTGCAAAAACAATAAGTAGTGTATGGAGAAATTTTCTAtttctttggggaaaaaaaatgtgtctttaaccttgaaattatttctttataataTACGAAAAGGGAAGAAATTATAGCAATTTTTCAAATATGGGCTTTTGTTTAATGGGGTATTGGGACTCTGAGAGGAAAACTTTTGATATAATTCTGCGGTTTGTTAATTAATACTGGAAAATACAGCCaagaaagaaatgaataaataatacataggTAGAAAAACTACCTTTACTTGTTATCTTTGCTAAAGGTCATTGGATCTGACAGGAAGTGAACtatagtaaaaatatatattcatttgtttCACTGTAGAAATATGCAAATCTATCGCTGTAAAGCAATCTCCGTGCATTCCTCTACACAAACTATACATTCAGGGATCCTACTCATGCAGATTTGACTTCTGATCGTGGGCTGATTAAACGGGTCTCCAGTTCCAAGCAACACTCTGATGAATCGAGGAGATGTTTGAGAGCTGCTGGTAATACATTAATACTGCAGACGTGGTGCTACATGGCAGAGACACAAACTGTTTGAAGGAAacataatgtaaatgtgaaGCATTTGTTTAAACGTACAATTGAaatctttgtattttaaaaattgattaaattgattCGACACACAAGGTTGATGAA
>TU153860
CGCGTATTCGtcctggagcagcagcagcaggcaaaGTCCATCTTGCACCACATCAACATCTCGGAAATCAAGCAGCTTcctttggtttattttggaCATCTGAGAAAATCATGGGAAGGAAAGATGCGACTGCTGCCAGGCTTCCAGTTGATCAATACCGCAAACAAATCGGAAAACAGGACTATAAGAAAACCAAATCTGCCTTAAAAGCAAGCAGATTAAAAGCAGAAGCTAAGAAAAGTGCCCTGGGAATACGGAAATGGACTTGGACCTGGATGTGGAGTAAAAGCCGCCCTCCTTGAATGCTGCCTGGCTCTCAGCAGACTCCATCGCCCCCTCGGTCTTGACTGGGCAGAGCCAGAGGAGATGAAGACTCACTGTCCTTTTCAGAGTCCCAGTGCATCGCGCTTCATTCACCACGGCTCATAAAAACAGGCTCCCTGCTGTGTGGCCTACCACACTTCCACTGCACAAGAAGGGCTGCGCATGGTGGATGGGCATCATAAACATCTGACCTAAAAGGGGAATGAAAGAATGACCGGATCGACAGGGACAGCAATCAGACTCGCAAGTTACAGACAGTAACTGCTCTGGACGGCATCGGTAGTTCTGTGTTGTTTAGGGTGTTCATGATGTTTAATCACTCAGAAGCACCATTCCACTATATTTGTGTTATTCCAGATATTTTTAGGTGGcgtgcaatcaaatgttttcaaaaccaaaaaagcacaATCTCATTGTCCTGATTTGGTACTGTTATATTGTGTAGGGACTTACGATGCTGATCTATAACACATTGTcttactttcatttaatttcacatgcTTTGGGAACAAAAATAATGAGGAGTGAAAGTTTTACCTGCAAAAACAATAAGTAGTGTATGGAGAAATTTTCTAtttctttggggaaaaaaaatgtgtctttaaccttgaaattatttctttataataTACGAAAAGGGAAGAAATTATAGCAATTTTTCAAATATGGGCTTTTGTTTAATGGGGTATTGGGACTCTGAGAGGAAAACTTTTGATATAATTCTGCGGTTTGTTAATTAATACTGGAAAATACAGCCaagaaagaaatgaataaataatacataggTAGAAAAACTACCTTTACTTGTTATCTTTGCTAAAGGTCATTGGATCTGACAGGAAGTGAACtatagtaaaaatatatattcatttgtttCACTGTAGAAATATGCAAATCTATCGCTGTAAAGCAATCTCCGTGCATTCCTCTACACAAACTATACATTCAGGGATCCTACTCATGCAGATTTGACTTCTGATCGTGGGCTGATTAAACGGGTCTCCAGTTCCAAGCAACACTCTGATGAATCGAGGAGATGTTTGAGAGCTGCTGGTAATACATTAATACTGCAGACGTGGTGCTACATGGCAGAGACACAAACTGTTTGAAGGAAacataatgtaaatgtgaaGCATTTGTTTAAACGTACAATTGAaatctttgtattttaaaaattgattaaattgattCGACACACAAGGTTGATGAAGTTCCCTTTGACTGTTTATAATGAACTACAC

Function

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002360 True 1639 mRNA 0.40 4 12011971 12016053
TU153860 False 1565 lncRNA 0.40 4 12011997 12016084

Neighbor

gene id symbol gene type direction distance location
AMCG00002364 NA coding upstream 19014 11990957 ~ 11992957 (+)
AMCG00002362 NA coding upstream 28535 11967375 ~ 11983436 (+)
AMCG00002356 NA coding upstream 52166 11933625 ~ 11959805 (+)
AMCG00002353 NA coding upstream 89105 11919666 ~ 11922866 (+)
AMCG00002354 NA coding upstream 106166 11904873 ~ 11905805 (+)
AMCG00002361 NA coding downstream 8918 12025002 ~ 12027049 (+)
AMCG00002363 NA coding downstream 13900 12029984 ~ 12045017 (+)
AMCG00002366 fam92a1,LOC103394454 coding downstream 30718 12046802 ~ 12051713 (+)
AMCG00002365 NA coding downstream 44672 12060756 ~ 12075382 (+)
AMCG00002369 pdp1 coding downstream 63879 12079963 ~ 12081582 (+)
G122592 NA non-coding upstream 154645 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 295270 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 325653 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 468350 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 478511 11530886 ~ 11533460 (+)
G122737 NA non-coding downstream 88586 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 112296 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 113794 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 356717 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 388858 12404942 ~ 12411141 (+)
AMCG00002355 NA other upstream 113270 11894473 ~ 11898701 (+)
G122582 NA other upstream 175802 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 296599 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 317806 11688600 ~ 11694165 (+)
G122482 NA other upstream 381079 11629012 ~ 11630892 (+)
G122746 NA other downstream 117702 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 1015675 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 1028609 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 1109294 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2311548 14327632 ~ 14361536 (+)

Expression


Co-expression Network