AMCG00002363


Basic Information

Item Value
gene id AMCG00002363
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12029984 ~ 12045017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002363
TATGATGACTGTTCATCTAAAATGATAACCATTAGCAAATCATTAGGTCCAATAAAATGTCCTTTCGGTTAAAGTTTGACTAGCTCAAAGGAGTGTTTCAACAACCATTTATGCTCAAGAGCCTGAGGAATGACAAAGAGCTTTTCATTAAGacGATTACGAAAACTGAATTCTGGGAACACAAGAAGGGTCCAATGGTGGACAAGATCCTAGACGTTCAAGAAGGAACTGAGACACCATATCCAATCTATCAGttcaaaGCATCTGATCTTGCAGTGAAGACATTTCGAGTAACGGGGGAGACAGacaataaaattgaaattgacaaTGATGGATGGCTGTATCTACAGCATGCACTTGACTGGGAGGAAAAGCAGAGTCACAGTTTAACGATTGAAGCCCTTGATGAGACATCAGAGACAGTGGAGGGACCTATCTCAGTCACGATAATTGTAAAAGACGTAAATGACAACAGGCCAATCTTCAACCAGTCTGAGTACAATGGAGTTGTGAGAGAGCACTCATTAGCTGGGGAGCCTTTCATGAAGGTTTTTGCCACCGATCTGGATGACCCAAGCACCTCCCATGGCAAACTGAGattcagcattttaaatcaaattccaGATCGCCTCAAGGTGCCTCTTTTTCAAATTGATCAGTTAACGGGGGATATTTCCACTACTCCAGAAGGGACAGAAGCACTGAAGGCCAGAACACCATTCATGATTCAtcaagaagaggaagaggacagTCTGCAGAGCTTGATGAGAAAATTTGATGCATATTGCATTCCCAGACAGAATGTAACCTATGACATGAATCCATTCTTCACATGTGTACAGCGAAAAGGCGGTTTGAGGGTGGACCCACAGATTGATGCTGACTATACTCTCATTATTGCCGTCAAAGATTTAGAAGGCTTGTCAGAAAACGCTTTGAGTGGAAGCACAAAGGTGAACATTGTggtgaaacagaatctttgggTCGCCCCCAAACCATTGTCCATTCCAGAGAACTGGCCAGAAGTGCACCCCTTCCAGATCACACAGGTCCAGTGGAATGAACCAGGAGCAGTATATGTACTTGCACAAAAGGAGAGGTATCCAAAGTTTCCCTTCACGATAGATATAGAGGGCAGAATCTTTCTGACTGAACATCTTGACAGGGAAGAAGAAGATATgTATGTATTGGTGGTATTTGTCCGAGATGAATATAATAATGATCTGGACAGACCATTGGAGATTCACATCACTGTTGAGGATGAAAATGACAATGCACCAGTGTGTGAGGAGAAAGAGACTGTTTTTGAGGtgcaggaaaatgaaaaaatagGTAATGAGATTGGAAATCTAAAAGTCACAGATCTGGATGAAGAAAATACAGAGAACTCCTTGCTCAGCTATCAGATCAAGAGTCAAGAGCCAAAGCATCCTTTTCCCAGCATGTTCAGCATTGATGAAAATCTTGGGAAAATTCAGATTGAAAACGCACATTTCCAGAAGCGGGAGTTTCCACAGTACAACCTAACAGTGAAGGTTTCTGACAAGGGAGGGAAAGCCTCAggaTTAATCACTGAATGCAAAATTGTCATAAAAATCATTGATATCAACAACCAGATTCCAATATTTCAAAAAAGTCAGTATGAGCCCATAACCAAGTCAGAGGACACCGCTGTTGGAACCACTTTGCTCAGTCTACAGGCGACTGATAATGATGACCCAGGAACAGGCAGCTCAAAAATCGTGTACACTGTCGGAGAAGGGGATCCCGAAGGAGTTTTTGCTATCAAtacaaatgaagaaacaaatgaaGGATATCTTTATATTGTCAAGCCCCTTGACTTCGAAGCTCAATCTCTTCATCGCCTTCGTATTGACGCGAGAAACCCAGAGCCCTTGGTTTCTGGAGTAAATTATAACTCCAGTTCCTCAACATTTGTCACCATTAATGTTACTGATGTCAATGAAGCCCCAGTTTTTGATAGCGTTATTTACCAGGAAACTGTCCTTGAAGACCTTGCTGTTGGAACCGTGATTCTAAATGTACATGCCAATGACCCAGAACATACAAAAATCAGCTATAGACTAGAAGACGACATCTTCAACTGGTTGGAAGTGAATCCCGATACTGGAGATATAAGTTCAAAAGCAAGCCTGGATCGGGAGAAGACTGATGTGTACAATGTGCGCGTTATTGCTCGTGAGAAAGAAATCCCTTACCAGGAGACAGAGGTGCAAGTcactatttatttgaatgatatCAATGACAATATCCCAAAATTGACAATGCAAAACCCTGAAGCAGTCTTTTGCTACCCTCTGGGAGAACCCAAGGTTATCCTGCTGGAGGCAACAGACCCTGATCTGTCACCCTTTGGAGCCCCTTTAACCTTCTCCATTGATGACAAGTACTCTCTGGACTGGAAAATCGAACAAATTAACGGAACATTTGCAAAGCTTGTAATGCAGCACAAAAATTTTCAAGAGAAATCCCACAAGGTTGACATaaaaatcaaagaccatggaaatTTAGAAAATTCACAACCATTTTCAGTTGGCATTTGTACATGTTCTAAGAATGGAGATTGCTACTTTGAGCCAGACACACAAAATGATAAGCCATCAATTACCTTAACTGCTGGTGTGCTGGGAGGAACATTTGCATGCATTGCTTTGATTCTGATGACTGTGTATTGCCGGATTAAAAAGAGGAATCCTGAAAACACGACAAAACAACCTAATGGTTCAGCAGAAATAAATCCAATGTTAGAGTAATTTTCCACAAAAGCACTCATTTTaagatcatttttaaaaacaaccaaataacAGCACTCTCTTATCAGTACCTTCCTGATTATTATATCTTCTTGTGTATGTCTGTTTATCAGCGATGTCAAACTCATTGTCCTTTGCATTGATGTGTCTCCTAGTTTTCTTTTCAACTGAGTTCGCCTTTACTTAATTGGCTTAATTATGTGATTATGTAACTAGAGATAAAATAGAAATTCCTTCCAGGTCTTAGAATATTTTGTAGCTCTTTTTCCTTGGCCAAGCTTAATATTTAAATCGGCAAGtgtgcataaatatatacatacatacatatatatatatattaatcagagGAAATGATTAGTAAGTACTGAATATATTAAGAATAAATCATAAATGCCTACAGTCCTTCAGGTTCAGaggctgaattaaaaataaaggaagtgCAATGCTTCCTAGCCCTggctattaaaacatttatggtcaagcaaaaaaaatgtataaggaATGTAAGGTTTTAGCTTATTTTGATGAGTAGTTTTAGCACCAGCATTGCATATCTTAATtagctattttaattaaagcacatATGTTCACTGTCTAAAACTAAATCTTGCTGATTGTTACCTGAATGAAAAGCTTAAGAAGTAAGATATTTAGTAAGTAAGTTGCTTTTTCTTGAAACAGAGAAATACAAGTCTCATTAATGATCTTTGGTGTACATGAACTTTATAATGAAAaccattgaaaatgtattttgggaGTTATgtgtaatacatatatgtaacgcagttatatgtaatgtaatacatGTAATCATCATATGGAGGACTACACagaatgtgatatattattcatatttattgagAGACATACAAAGAAGCTAAATAGCTAGGGAATGGTTTATTTACCATAATGCCAGgccattcattaaattaaaggataataataacataactgAAATTATATTCTGGTCCTTCCATCTgtgtaacaataaataattataatttgcagAGCCACCTCACAGTAGGATACAATACTGTTTATTGTTGATTTTACTGTACTACAATAGACTTAAccacaatgcaaataaaaaaagttaaaacga

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06811 CDH17; cadherin 17, LI cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002363 True 3876 mRNA 0.38 18 12029984 12045017

Neighbor

gene id symbol gene type direction distance location
AMCG00002361 NA coding upstream 2935 12025002 ~ 12027049 (+)
AMCG00002364 NA coding upstream 37027 11990957 ~ 11992957 (+)
AMCG00002362 NA coding upstream 46548 11967375 ~ 11983436 (+)
AMCG00002356 NA coding upstream 70179 11933625 ~ 11959805 (+)
AMCG00002353 NA coding upstream 107118 11919666 ~ 11922866 (+)
AMCG00002366 fam92a1,LOC103394454 coding downstream 1785 12046802 ~ 12051713 (+)
AMCG00002365 NA coding downstream 15739 12060756 ~ 12075382 (+)
AMCG00002369 pdp1 coding downstream 34946 12079963 ~ 12081582 (+)
AMCG00002370 NA coding downstream 36609 12081626 ~ 12087824 (+)
AMCG00002372 NA coding downstream 56789 12101806 ~ 12104566 (+)
G122592 NA non-coding upstream 172658 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 313283 11716355 ~ 11716701 (+)
G122501 NA non-coding upstream 343666 11685432 ~ 11686318 (+)
G122478 NA non-coding upstream 486363 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 496524 11530886 ~ 11533460 (+)
G122737 NA non-coding downstream 59653 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 83363 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 84861 12129878 ~ 12130747 (+)
G122829 NA non-coding downstream 327784 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 359925 12404942 ~ 12411141 (+)
AMCG00002360 NA other upstream 13900 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 131283 11894473 ~ 11898701 (+)
G122582 NA other upstream 193815 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 314612 11710450 ~ 11715372 (+)
AMCG00002331 NA other upstream 335819 11688600 ~ 11694165 (+)
G122746 NA other downstream 88769 12133786 ~ 12140465 (+)
AMCG00002390 NA other downstream 986742 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 999676 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 1080361 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2282615 14327632 ~ 14361536 (+)

Expression


Co-expression Network