AMCG00002368 (rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339)


Basic Information

Item Value
gene id AMCG00002368
gene name rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11995828 ~ 12006352 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002368
GTTTGCAGGAGCGCATTGAGTGGGATGGGGAGAGCCAGGGCAGTTCGGTGCAGAAGAACCAAAGAGAAGCACAGCGAGCCTCGTCCCGGACGATTGAAAACGCACCTACCTCGAGTGTTTTCCCACTCCCTTTCTTAAAAGCGACACCcccctttacacacacacacattgcactgGGCTCTTGAGAAGATGCACACGACGCAGAAGGACACCACCTACACCAAGATCTTCGTGGGGGGGCTGCCGTACCACACCACGGACTCCAGCCTGCGCAAGTACTTCGAGGTGTTCGGCGAGATCGAGGAGGCGGTGGTCATCACGGACCGGCAGACCGGCAAGTCCCGCGGCTACGGATTCGTCACCATGGCTGACAGAGCTGCAGCTGAAAGGGCTTGCAAGGATCCCAATCCTATCATAGATGGCAGGAAAGCAAATGTAAATCTGGCATACTTAGGTGCCAAACCAAGGGTAATGCAACCAGGTTTTACCTTTGGTGTTCAACAAATCCACCCTGCATTCATCCAGAGACCGTATGGGATCCCTGCTCATTATGTCTATCCTCAGGCTTTTGTGCAGCCCAGCGTTGTTATCCCACATGTTCAGCCCGCTGCAGCCGCAGCAGCGGCAGCCACTTCTCCGTACATCGACTATACTGGTGCCGCATATGCACAGTATTCTGCCGCTGCCAATGCAGCTGCAGCTGCCTACGAACAGTACCCCTATGCAGCTTCCCCGGCAGCAACTGGGTACATGACCACGGCTGGGTACGGCTATGCAGTCCAGCAGCCCCTGACAGCTGCGGCTCCCGGTTCGGCCGCCGCTGCCGCCGCTGCCTTTGGCCAGTACCAGCCACAGCAACTGCAGACCGATCGCATGCAATAACAGCTGGACCTCCGGAATAAGAGCGATGGTGATGGCCTTGTGAGCAGGAAGAGGTGTAGGGTCATATTCCTTAGCTTTACAACTTGCAGTGATACTAAAAGCAAGGCAGTATGAAATAAGGAGCTGAAGATtacttcttttgttttattttatcatggtGATAGTtataaaaagtgaaacaaaaacaaacacctgtGCTGTATAAGTAGGTTCGATCATTAATGTCAATGAAAAGTATCTAAGTATTtgaattaacacacacaaaaactgctTTATTGCATTCTGAAGCTCTACTTTCACTgctcaataaatacaataagtgcaGCCCTGCAGAAGTACCACTGAAGACGCGTCTCACTGTTTTTGCAGCTGGAGAGACGAGTATTCAGTTaactcttattttatttactaaagCAGAGCTCCAAATTGTGTAAAAGCAAACCAATGCTGCATAAGTTTAATACTAATAAGGAAATAGTGCTATCTTTTACACAATAAGTAGAGGAAAGAAATGTCTGTTATAACTGTCCCTTATAATTAAGTAAAGtccagtttcatttatttatttatatttatttatttgtttatttattattatgattgaaAGGGCTCTCATTCTTCATAACTGCATTGCCTTTTTCCAGTTATCAGGGAAAGAAAgtattttccaattaatttaaagactCTGCAGATCAGGGAATAGTAGAAGTAATCATGCaaactaattatacaaaatgctGTAGCTCATATTGTAAGCAAAAAAACTGCCTTTCATCTTCCAAATGCTGAATGTCCTTTATGGCTTTCATCTTGacctatgcatttattttttatttttaggacaTTTTGATATCTCTCTTTAAAGGGCATCGAACAATTTTAAGGCACTCtagtaaaacaaagtaaagcaccaaaaaaaaacaaaaaggcaccaacattgttttctttctcgtTCTCTGCATGAGTGGAACTCGGGAGCGAACGATGTGGAATAAAAACGGTGCAACAGCTGTCCGGACAATCAATAACACAGACAGCTCTGGAAAGAACGCATCACTTGTGCTTATGTGATGAGCTGTCACGTTTTAATCCCTCTCCCCGTCCGTTTGGGAAACTTTAACTGCTGGTGTCAGCTATTCCAATTCTGCAACAGGATCAGCCCTTGACGACAACAGACTTGTCTTTCTATTTATTGCACCTGTCcagagcattttttttgtttctttctgaatgaaatgcaagagaggaaaaacaaaatgtgaagctTAACCCTTTAAAACCTGCTGTTTTGTTCAACATTAATAATCACACacccatttgtattttaatttttttatgtgtatatcTACCATACAGCTGCATCttaaaaggttaaaaatatTCCTGTGCAcccagaaaacacatttatgaaatcgcttgttgtgtttaaaaacagCACTGACGTTTTAAAGGGTTAAATACTAGTCTGTGGTTCTTACTGTGccttataatatttgtaatactatttatgagaaaatatatttattttgaaagttgtTGCGCACTGAGTAAGGAAACTTAGCTGTGATACTGTATAAATTAATCTTATGTATTCATCTCATGGCATATAAATTATGAAATAGGTTTTAGGTGTAgtataattaatattcattCGAAAATGTTGACTAGGGTTATTTAAGATCCAAAATGTATGTGcactgtacaatatatttttgcctttgAATTTTAGAAcgacattaaatattttctagTTCAATGCCTtttctattaaacattttaaatgcaggcCTGTTGCCCAGAAGGTATGTATCTCTGCTCGTGTTTAGAAACctagaaatgaaaaatgacacacacacacaaacagacaaaactaatgataaaattaattgcaaaatgctgctttatatgttagaatgtattgtCTTGTAAAGTGTGAACATCTGTGCTTTTATTGTTGATCTTTATCAAATGGACTATTTTACACTGTTGAGAATTTTTATACTTGAACAATTTCTTACAAgggaaaaaacataatgaaaaaatatatatatactttttaaggAGCCTTTTCATTGTGACTGGATTATGTAAAGTATTTGCGGAATTCCAGTGTTATACAATTAAACTGCAATGGTCCttttgatattaatattatttcagaaTCTCAATAGTATATACTctcagttaaataaaaatgatatatataaatcata
>TU153859
TTTGCAGGAGCGCATTGAGTGGGATGGGGAGAGCCAGGGCAGTTCGGTGCAGAAGAACCAAAGAGAAGCACAGCGAGCCTCGTCCCGGACGATTGAAAACGCACCTACCTCGAGTGTTTTCCCACTCCCTTTCTTAAAAGCGACACCcccctttacacacacacacattgcactgGGCTCTTGAGAAGATGCACACGACGCAGAAGGACACCACCTACACCAAGATCTTCGTGGGGGGGCTGCCGTACCACACCACGGACTCCAGCCTGCGCAAGTACTTCGAGGTGTTCGGCGAGATCGAGGAGGCGGTGGTCATCACGGACCGGCAGACCGGCAAGTCCCGCGGCTACGGATTCGTCACCATGGCTGACAGAGCTGCAGCTGAAAGGGCTTGCAAGGATCCCAATCCTATCATAGATGGCAGGAAAGCAAATGTAAATCTGGCATACTTAGGTGCCAAACCAAGGGTAATGCAACCAGGTTTTACCTTTGGTGTTCAACAAATCCACCCTGCATTCATCCAGAGACCGTATGGGGTCGTTTACAGTTAAGATAACTGATGTCATGAGAAGGATTTGATGATATGAGGTGGAATAGCTGTGTTCCGCATTGAGCAGATCTTAAACTGTTACCAGTagactcaaacacacacaaacaagctaAAATGGATCCCTGCTCATTATGTCTATCCTCAGGCTTTTGTGCAGCCCAGCGTTGTTATCCCACATGTTCAGCCCGCTGCAGCCGCAGCAGCGGCAGCCACTTCTCCGTACATCGACTATACTGGTGCCGCATATGCACAGTATTCTGCCGCTGCCAATGCAGCTGCAGCTGCCTACGAACAGTACCCCTATGCAGCTTCCCCGGCAGCAACTGGGTACATGACCACGGCTGGGTACGGCTATGCAGTCCAGCAGCCCCTGACAGCTGCGGCTCCCGGTTCGGCCGCCGCTGCCGCCGCTGCCTTTGGCCAGTACCAGCCACAGCAACTGCAGACCGATCGCATGCAATAACAGCTGGACCTCCGGAATAAGAGCGATGGTGATGGCCTTGTGAGCAGGAAGAGGTGTAGGGTCATATTCCTTAGCTTTACAACTTGCAGTGATACTAAAAGCAAGGCAGTATGAAATAAGGAGCTGAAGATtacttcttttgttttattttatcatggtGATAGTtataaaaagtgaaacaaaaacaaacacctgtGCTGTATAAGTAGGTTCGATCATTAATGTCAATGAAAAGTATCTAAGTATTtgaattaacacacacaaaaactgctTTATTGCATTCTGAAGCTCTACTTTCACTgctcaataaatacaataagtgcaGCCCTGCAGAAGTACCACTGAAGACGCGTCTCACTGTTTTTGCAGCTGGAGAGACGAGTATTCAGTTaactcttattttatttactaaagCAGAGCTCCAAATTGTGTAAAAGCAAACCAATGCTGCATAAGTTTAATACTAATAAGGAAATAGTGCTATCTTTTACACAATAAGTAGAGGAAAGAAATGTCTGTTATAACTGTCCCTTATAATTAAGTAAAGtccagtttcatttatttatttatatttatttatttgtttatttattattatgattgaaAGGGCTCTCATTCTTCATAACTGCATTGCCTTTTTCCAGTTATCAGGGAAAGAAAgtattttccaattaatttaaagactCTGCAGATCAGGGAATAGTAGAAGTAATCATGCaaactaattatacaaaatgctGTAGCTCATATTGTAAGCAAAAAAACTGCCTTTCATCTTCCAAATGCTGAATGTCCTTTATGGCTTTCATCTTGacctatgcatttattttttatttttaggacaTTTTGATATCTCTCTTTAAAGGGCATCGAACAATTTTAAGGCACTCtagtaaaacaaagtaaagcaccaaaaaaaaacaaaaaggcaccaacattgttttctttctcgtTCTCTGCATGAGTGGAACTCGGGAGCGAACGATGTGGAATAAAAACGGTGCAACAGCTGTCCGGACAATCAATAACACAGACAGCTCTGGAAAGAACGCATCACTTGTGCTTATGTGATGAGCTGTCACGTTTTAATCCCTCTCCCCGTCCGTTTGGGAAACTTTAACTGCTGGTGTCAGCTATTCCAATTCTGCAACAGGATCAGCCCTTGACGACAACAGACTTGTCTTTCTATTTATTGCACCTGTCcagagcattttttttgtttctttctgaatgaaatgcaagagaggaaaaacaaaatgtgaagctTAACCCTTTAAAACCTGCTGTTTTGTTCAACATTAATAATCACACacccatttgtattttaatttttttatgtgtatatcTACCATACAGCTGCATCttaaaaggttaaaaatatTCCTGTGCAcccagaaaacacatttatgaaatcgcttgttgtgtttaaaaacagCACTGACGTTTTAAAGGGTTAAATACTAGTCTGTGGTTCTTACTGTGccttataatatttgtaatactatttatgagaaaatatatttattttgaaagttgtTGCGCACTGAGTAAGGAAACTTAGCTGTGATACTGTATAAATTAATCTTATGTATTCATCTCATGGCATATAAATTATGAAATAGGTTTTAGGTGTAgtataattaatattcattCGAAAATGTTGACTAGGGTTATTTAAGATCCAAAATGTATGTGcactgtacaatatatttttgcctttgAATTTTAGAAcgacattaaatattttctagTTCAATGCCTtttctattaaacattttaaatgcaggcCTGTTGCCCAGAAGGTATGTATCTCTGCTCGTGTTTAGAAACctagaaatgaaaaatgacacacacacacaaacagacaaaactaatgataaaattaattgcaaaatgctgctttatatgttagaatgtattgtCTTGTAAAGTGTGAACATCTGTGCTTTTATTGTTGATCTTTATCAAATGGACTATTTTACACTGTTGAGAATTTTTATACTTGAACAATTTCTTACAAgggaaaaaacataatgaaaaaatatatatatactttttaaggAGCCTTTTCATTGTGACTGGATTATGTAAAGTATTTGCGGAATTCCAGTGTTATACAATTAAACTGCAATGGTCCttttgatattaatattatttcagaaTCTCAATAGTATATACTctcagttaaataaaaatgatatatataaatcatattattGTGGCATTCATTCATTGGGAAATGGTTTGAAATCAAATAGGTCTCTGTTTGATGGAAAGGAAATCTGGGTTGCTATTCCCATAGAAATGCAAcagaattcattattttatttgatgttttcgTTGTGAAATGGACAGCCATTCGCAAATCCGGTTTGGTTTGAAATGGcgtgttttaaattgaaagagGTGGA

Function

symbol description
rbm24a Predicted to enable RNA binding activity. Involved in positive regulation of sarcomere organization. Acts upstream of or within several processes, including atrial cardiac muscle tissue development; embryonic organ morphogenesis; and regulation of sarcomere organization. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including cardiovascular system; cephalic musculature; immature eye; segmental plate; and sensory system. Used to study cataract and microphthalmia. Orthologous to human RBM24 (RNA binding motif protein 24).
rbm24b Predicted to enable mRNA 3'-UTR binding activity. Acts upstream of or within several processes, including animal organ development; atrial cardiac muscle tissue development; and somitogenesis. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including cardiovascular system; fin bud; pharyngeal musculature; segmental plate; and tail bud. Orthologous to human RBM24 (RNA binding motif protein 24).
rbm24 Enables mRNA 3'-UTR AU-rich region binding activity; mRNA CDS binding activity; and sequence-specific mRNA binding activity. Involved in several processes, including negative regulation of cytoplasmic translation; positive regulation of cell differentiation; and regulation of mRNA metabolic process. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: RNA-binding protein 24-like isoform X2

GO:

id name namespace
GO:0003228 atrial cardiac muscle tissue development biological_process
GO:0043488 regulation of mRNA stability biological_process
GO:0010830 regulation of myotube differentiation biological_process
GO:0060297 regulation of sarcomere organization biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002368 False 3095 mRNA 0.39 4 11996026 12006352
TU153859 True 3424 TUCP 0.39 5 11995828 12006351

Neighbor

gene id symbol gene type direction distance location
AMCG00002359 NA coding downstream 77728 11913110 ~ 11918100 (-)
AMCG00002358 NA coding downstream 82813 11905910 ~ 11913015 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding downstream 103129 11882073 ~ 11892699 (-)
AMCG00002345 NA coding downstream 126476 11864614 ~ 11869352 (-)
AMCG00002349 NA coding downstream 162005 11830472 ~ 11833823 (-)
AMCG00002367 NA coding upstream 49289 12055641 ~ 12060552 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding upstream 75759 12082111 ~ 12096642 (-)
AMCG00002377 NA coding upstream 92972 12099324 ~ 12100920 (-)
AMCG00002375 NA coding upstream 117846 12124198 ~ 12139756 (-)
AMCG00002376 NA coding upstream 133653 12140005 ~ 12142344 (-)
G122621 NA non-coding downstream 131772 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 136503 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 147636 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 150157 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 276859 11718530 ~ 11718969 (-)
G122726 NA non-coding upstream 36963 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 189568 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 994489 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 1045674 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 1060869 13067221 ~ 13067627 (-)
AMCG00002351 NA other downstream 122966 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 140937 11848470 ~ 11854891 (-)
G122597 NA other downstream 261504 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 310739 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 467910 11514000 ~ 11527918 (-)
G122862 NA other upstream 1021845 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1642875 13649227 ~ 13654247 (-)
G123263 NA other upstream 2934908 14941260 ~ 14946311 (-)
G123585 NA other upstream 4829804 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 4951810 16958162 ~ 16974301 (-)

Expression


Co-expression Network