AMCG00002376


Basic Information

Item Value
gene id AMCG00002376
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12140005 ~ 12142344 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002376
GCGTTTTTCAAATCAAGCGCGACCGACGCGAGTAGTTTGTCCCTCTCCGGCTGTGTTAGATGTAGTCGCGGTGCCAGTGCGCAGGACAGGGCGATGTAAACAACGTGGGGAGACACACAAACAGCGAGCAGGTCAGCCAGTCCGACACCAAACTGCAGTATAATCCGAACCGAGCGGTGCTGAGGACCCTGATGCGCAGGAGGTATTCCCAGCACCCGAGTCGTGAAAAGGTATCGAGGGAAAATCTGAACATCTGCAGTACTCCTGCAAGCTACTCCTGCCATGTTTCCAGAGCTCAACAGCATCCTGAACACCAGCCCTGAACACTGCCCACggGGGGAGTTTGTCCTGGTGTCAGACAGACAGGCGGATGCATCTTTCCtcatccatcactttctgtccttCTACCTGAGAGCGGGCTGCAAGGTGTGCTTCCTGGGCCTGGTGCAGTCCTTCAGTCACTACAGCgcggtgggccagaggctgggcgTGAACCTGGTGCAGGCGAGGGACAGGGGTCAGCTGGTGTTTCTGGAGGGGCTGAAAGACTCACTGGGCACCCTGCTGCAGGAGGAGCCCGGCCCACACGCCAACACCCTGGACTTCCTCAGCTCCCCGAGGCCAGAGCTGCGCCAGCTGTTTGAGTTTGTGCAGAGATCAGTGTCCCCGGGGCCAGGGGAAGAGGGGGCCGGCCCAGTGCTCATCGTGGACGACCTGAGTGTGCTGCTCAGCCTGGGACTCAGCCCCTCGGCCCTCACGGACTTCAGCCACTACTGCAGGGCCGCGGTCTGCACCGAACTGCAGGGCAGCGTAGTGGTGCTGGTGCGCActgcggaggaggaggaggaagaggaggataaAGGCTCTGGATTACTGCTGGCTGGCCTTTCTCACCACAGCAGCCTGGAGCTGCGAGTGCAGGGCCTGAACACCGGCCACTGCAGGGACATCCACGGACAGCTGGAGCTGTGTTGGCGGAGGGGCAGCAGTGCCAGTGGGCCAGCAGAGCGGCGGCGGGTCCTGCAGTACAAGATCCAGGACAGGGGCGTGTCTTTCTTCGCCAGGGGCACCTCCAGCGCCGTGTTGTGACCCTCCCACTCTGACCCCCTGGCTCcccaacacacccacacatgcaCCTCAACACAGTGGAACCCAAATGCCGTGGGTCTCCCAGGGGTCGGAGCACAAGTCAGGGCACAGGGACACAGGAGGACTGCAACAAGAGAAGGTCATTTTGATGAGTGACCTCAGCGCTTCACCCGCAGTGTGATATCCTCGAGTCGCCCCCAGCCCGAGCCAGAAGAGTCTGAGAGAGTGCTTTCCTCCGTCACGTAGCACGCTCTGCTTTTGGGCACCAGACTTGCCGtgagagagatgcacaggatTGGATGGGATtggaaactgtaaaaataaacaaataaactgtaaaaagtCA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0033588 elongator holoenzyme complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002376 True 1435 mRNA 0.60 8 12140005 12142344

Neighbor

gene id symbol gene type direction distance location
AMCG00002375 NA coding downstream 249 12124198 ~ 12139756 (-)
AMCG00002377 NA coding downstream 39085 12099324 ~ 12100920 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding downstream 43363 12082111 ~ 12096642 (-)
AMCG00002367 NA coding downstream 79453 12055641 ~ 12060552 (-)
AMCG00002359 NA coding downstream 221905 11913110 ~ 11918100 (-)
AMCG00002374 NA coding upstream 2802 12145146 ~ 12171681 (-)
AMCG00002382 smarcc1,LOC106605342,LOC106581105 coding upstream 42690 12185034 ~ 12203026 (-)
AMCG00002384 NA coding upstream 105803 12248147 ~ 12248946 (-)
AMCG00002383 NA coding upstream 108948 12251292 ~ 12260406 (-)
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding upstream 341550 12483894 ~ 12504026 (-)
G122726 NA non-coding downstream 94986 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 275949 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 280680 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 291813 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 294334 11844392 ~ 11845671 (-)
G122801 NA non-coding upstream 53576 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 858497 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 909682 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 924877 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 926490 13068834 ~ 13069238 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 133653 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 267143 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 285114 11848470 ~ 11854891 (-)
G122597 NA other downstream 405681 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 454916 11647911 ~ 11685089 (-)
G122862 NA other upstream 885853 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1506883 13649227 ~ 13654247 (-)
G123263 NA other upstream 2798916 14941260 ~ 14946311 (-)
G123585 NA other upstream 4693812 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 4815818 16958162 ~ 16974301 (-)

Expression


Co-expression Network