AMCG00002378


Basic Information

Item Value
gene id AMCG00002378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12204021 ~ 12211319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002378
GATGAAATCGTCAGTGTAGTTTTCCTTTCTCCTTTAACACATTCCCGATTTAGAGTGGGATAGCATGCGCCTGCGCACTGCGTGTGAAGCGCATAACGGGAGAGAGCGCAGCGGAGAGGCGGGGACGGGCAGctctctcctctgtgtctcCCCGGGACACGGAGGCAGAGGCGGCGGGGGGCTCGATTGTCCTCCCGGCGATGCCACCCAGTCGAGCCGGCGATGTATTTTTACTTCATCTGGCCTAAAATGAGCGGCAGTGCGGCGGTCGGTGGAGGCGGGGCAGCCGCAGCCCTGTCCATCAGCGAGCGGGGGAGCGGAGGAGACGGCGGCGCTGAGCTGGTAAATGGAGAGGGAGGCTGTGCTGCCTCTGCCGCCGCTTCGGACACTACTCCAGCCCCTGGCTTCGAGGCAGAGACCGGCAGCGCCAGGGCCCGAGAACAAACCGAGATGAACAGCGATGATTACACCCACAGCGAGGCAGAGGCGCTCCGTGGAGGCCATGGCGTGCGTGTGGACAGCGCCTGTGGCAGCAGCGGGGAGACGGGAGGCTGCGGGGAGGACCGCCGTGGCGCCGCCGGCGGAAAGGGAGAGCAGGCAGACGGAGCCAGGAACATTAATATTGATGAGAAAAGTAGCGGATTAAAGTCGGGGGGAAACTGGGGCGGACAGAGGCTGCGGACGAGCAGGACAGTGGGCGCAGCGGGGCGGGTTACCCCAGAGGAGCTCTCCAGCACGGCGAGGTACAGTAACGGAGAGCCCGGCTCTGAGGGAGAGACTGCGGGCAGGTCCGTTGCTCCAGCCACGGCTAAGCGGCAGGGAGGCGGCCTGAGCAGGGCGCCGAAGAGGGTGCGCTTCACGGTACCGGCACAACGCGCAGCACTCTCCGGGGGCAGAGAATGTAACAGCCGCACAGAGGTGCCCGAGCCCGGCCAAGCCCGGACACACCGCCTGCAGCGTGTGGAGCCGAGAGGATGCGAGGGAGCTGCGTATTCGGCCCGGATTACAGTGCCCTGGTTCTCCACCACGACAGGAGACAGCTGccctaataatattaatagcagCCATGGACGGGAGCCCAGATCTGCCAAGGGCCGGGTTAGGCTGTACAGAGTGCGCTCCTTCCTGACCAGCACAGCTGCTGACCAAAGCAAGCCTGGACGTGCTGGTGGGAATGGTGTCAGGTGCGCCCTGCCTGCCAGCACCCACTCTCCAGCTCTGTCGCAGCCCTGTCCTGGTCCGGGGCCCAGCGTTGGTTCTCTCCCCAGGCTCCAGGATTGCTGTCCCAGGCTGGATGCCAGTCAGGCAGTGAGCTTGCCTGGCTGGGCTTTTAGGAAGGCTAGCCAGGGAGCAGATGACATGCTAAGTGTAGGCAAGAAAAGCAATAATGCACTTCATTTCACAACCAAGGGAGGCGGTGTGGGCCTGAACGGTGTGAGGTCAAGACCGACCCCCAATGGCCTGAGCACGGGCAGCCGTGGGGCCGCGGCTGCTCTTGTGGAGGGCAAGGTGAGCAGGCCTGTGGGGGTCCCCAGCCTGCAGGCTATAGAAACGGGGAGACGGGAGGCGGGTCAAAGGCAGGTGGAGTTGGAGGCCCAGACGAAGAGACTGTGGAGGAGGCTGCAGGCGGTGCAGGTGAAGCAAATGGAGAGACATGTGGTGCAGCAGCTCAGCGGACTGGAGCTGCAGCAAGGGAGAGGGGGTGAAGGAGTGGCCGGGAGGGTCCTGCCGGTGGGGGAGAGACCCTTCCTGTGTGGGGCCCTGCAGCCCCTCCGCCTGCCCCGCACGGCCGAGGTGACCCGCCTGGCTCGGAGCTGTGCGGCCACCCTCAGGACTGTGGAGAGCGCCCTGGACTCTGACGCCACGGCCAGCAGCTCGGGGGGGGACAGCGATGGTGACGCAGAGGACAACATGGGGGCCGggggccacacacacacagccctgcctcCGCCCTGCACACTgcGGGACAGTGCAGAGTGGCAGTGGGCGGAGCGGCGGGCATGGCTGGGCAGCAGGTGGGCTTGGCTGCAGGCTCAGGTGTCAGACCTGGAGTATCGCATCCGTTCCCAGACTGACCTGCACTCACGCCTGCGCCAGGACAAGgTGCCGGTTGTAGTGAAAGACACTCCTCACCCCGGCCAGCTTCTCAACTCCTGCTACAAACAGACCAGAGACCTGCCCCACTCCCTGGATGATGTGCTGCCCACCTCCACTCCCCCCAGACCCCCTCGAGCCCCCTGTCCACCCAACGGCACCCTCTGCAGCTCTGTGCCCGGCCCCCCGGATCCCCTCAGGAAGAGGCTGCAAGAGGAGGCCCTCCCCTGCTCCCCCAACCACAGTGGCACGGCGGCACGGGTCCGAGCGCTGCAGGAACGCCGTCAGGGCCAGCTGCTCCGCCTGGGTGGGGGGCCGCCGTGCAGGACcaagTCTCAGGCTGTTTGTGTGCAGTGCTCCTGTGAGCCtccctcagtgtgtgtgctgtgcggGGGCGGTCCACCGTCCCCCCAGTCTGCAGGAAGTGTTCGGGGGTCAGTGTGGGAGCGCCGGGTCAGGCTGGACCCCTGCCTGCACCATGTCTTGTCCCAACCCCGCGATGTTCCCCTGGCTGTGCACTGTGGACTTGCGCCACTCTGCCCTTCTCTCCCCCGCCATGCTCTCCGGCGGCGGGAGGAGCCACTCCCCACTCCCTGGCTAGACTCTAGGGTTGGGGGGCCTCAGCGGCTCTCAAGACAGAAGAGGAAACTCCCCGACCCCCACCAAAGCCCCGGACACACACCCCCTCACCCTCCACATCCCACCTGTGCCGACGGTCGCAGTGAGAAGCTGAACAAGAGCTCGGTCAGCCTCAGTGTCGTCACCAGACCCCTCCCCGAGTGCCCCCTGCACACAGCTGCTGAGAcccccctctccactcccccaCAGCCCAGCCGGCGGCGGCGAGGCGAGAGCTCGTTTGACATCAATAACATGGTGATGCCGCTGGGCCTGGGGGGGGGCGCGCGTGTCCAGAAACTGCAGTACAAAGAAATCCTCACCCCCAGgtcctCTGCACGGGGAGAGGGAAAGCTGCTGCCCCCCCAGTTTTTAGGCTACGGCCAGCCTGCGTCGCCTGAGCCGATCCCTGAGGACCTGTGGGAGCCGTGGCCCCTGAGCCCCCCCGAAGTTGAGGACAGTAGCGGGCCCCTGGCTGATGATGAGGAGCTGGCAGTTTTGCCATGGGAGCGCCGGTCGTTCCCACTTTCGGAGGACGAGCTTCTGTCgctgaaggaggaggagccCTCCCCGCCCCCCTCTTACCCCCCCGAGGACCCCACCGGGGCTCGCAGCCACAGCACCGACTCAGGCATCTCTGTGGGCAGCCTTGAACTCTCCCCCGTCGCTCCCAGGCCCCCGCTGCCCGCCCAGGACCTCCAGCCCGCCGCCCTGCCCCCCGGCGGCACACTCAGGACCTCCTCTCGACGCTCTGACTGCTGCCTCTCCCCCACAGAGACGTCCTATCCCCCTGCGCCCCCCCTCTCAACCACAGACCCGCCCAGGGAACCGGAGATCCCCCTAACGCCTCTCCCGCCACCCTCCCGGCCCCCACAGATGCGGTGCATTGCGGCCACGGCTGAgggagagggggcggggggaaTCTGCAGTATTGAAACTAATCACCTGCTACGAGGAGGGTGCTGACACCCTGGGGCCCCCATATGGATGATACGAGGGCCCCAGACACGCTACACAAATGCCCCACTGCACTCACCCCAACTCACATCTGTCTGTTTCACCTGATGCCTGGGAACCAATGCAAAAggctctcttctctctccacCTCTGTCTCCACGCTGTGCTGGAGATGCCTAAGctatttctgtgcatttttctctctctctctctgtatctgtttgtgtctgtctcggATTAAGTTCTCatcaacccccccctccccacgtGGACCTGCTCCCTCAGCGGTGAGAGGCGCTTGTGAGGTTTTCTCCAGTGATTTGATATTTGTAAAAGTACAccaaaacatgcaaaaacaaatctatgacCAGAAAGCTCAGAATGCTTGAAAGGTGCAAaggtaatatataaaaaaactaaaaaacaaacaatatattgatatatacagaaataaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002378 True 4125 mRNA 0.64 11 12204021 12211319

Neighbor

gene id symbol gene type direction distance location
AMCG00002371 ptpn23,LOC106597002,LOC107591991 coding upstream 82244 12106189 ~ 12121777 (+)
AMCG00002372 NA coding upstream 99455 12101806 ~ 12104566 (+)
AMCG00002370 NA coding upstream 116197 12081626 ~ 12087824 (+)
AMCG00002369 pdp1 coding upstream 122439 12079963 ~ 12081582 (+)
AMCG00002365 NA coding upstream 128639 12060756 ~ 12075382 (+)
AMCG00002379 NA coding downstream 15530 12226849 ~ 12241355 (+)
AMCG00002381 NA coding downstream 30967 12242286 ~ 12243888 (+)
AMCG00002380 NA coding downstream 33404 12244723 ~ 12246989 (+)
AMCG00002386 NA coding downstream 427167 12638486 ~ 12696128 (+)
AMCG00002391 NA coding downstream 810248 13021567 ~ 13024109 (+)
G122744 NA non-coding upstream 73274 12129878 ~ 12130747 (+)
G122743 NA non-coding upstream 74343 12128380 ~ 12129678 (+)
G122737 NA non-coding upstream 98498 12104670 ~ 12105523 (+)
G122592 NA non-coding upstream 346695 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 487320 11716355 ~ 11716701 (+)
G122829 NA non-coding downstream 161482 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 193623 12404942 ~ 12411141 (+)
G122868 NA non-coding downstream 840706 13052025 ~ 13052390 (+)
G122876 NA non-coding downstream 855946 13067265 ~ 13067635 (+)
G122911 NA non-coding downstream 976630 13187949 ~ 13188278 (+)
G122746 NA other upstream 63556 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 187937 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 305320 11894473 ~ 11898701 (+)
G122582 NA other upstream 367852 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 488649 11710450 ~ 11715372 (+)
AMCG00002390 NA other downstream 820440 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 833374 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 914059 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2116313 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 4746842 16958161 ~ 16960082 (+)

Expression


Co-expression Network