AMCG00002379


Basic Information

Item Value
gene id AMCG00002379
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12226849 ~ 12241355 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002379
GAGGCAGTGTCTGTCCTGTGAGTGTATAAGAGTCGTGGTCGAAAaaagaggcagagaaagagaaggagagaaagagagatagaatGAACTCCAAGATGACCTCTATAGACAGTGCTGTCCCAGGCCAGAACGGGACCCTTGGCCCCAGGAACTGCACCCAACTGAGGGAAAACGGTACCGCAGGTTCCTCTGCATCAGACTGCTCGCCCTCCCTCTGCAAGGAGATGGCTTGTGGAGGGCGCCGGTGTCTGGGCTCCATCATGTACCCCTCAACAATGGTGCGCCGCTCTCCCGAACACCCCCCAGACCAGGTCAGCCTACTGGACCAAGCCACAGACTTCATAAACCACTACTACACCTCCATAAaacgCTCCCAGTCCGAGGCTCACCAGCAGCGGCTCAGCGTGGTGCAGAGGGAGATCATCACAACTGGGTCCTATCAGCTGGAGGAGACAGAGCTGATCTTCGGGGCCAAACAGGCCTGGAGGAACGCGCCCCGCTGCGTGGGGCGCATCCAGTGGTCTAAACTACAgGTGTTTGACGCTCGAGACTGCTCCTCAGCTGCGGAGATGTTCACCCACATCTGCAATCACATCAAGTACGCCACCAACAAGGGCAACCTCAGGTCTGCCATCACGGTGTTCCCTCAGAGGTCACAGGGTCACGGGGATTTCCGAGTGTGGAACCCCCAGCTGATTCGATACGCCGGCTACAGACAGCCGGACGGCTCCATCATCGGGGACCCCTCTAATGTGGAGCTCACCGAGCTGTGCGTACAGATGGGCTGGCGGCCAAGAGGGGGGCGTTTTGACGTGCtgcccctgatcctgcaggccCGTGGGGAGCCCCCCCAGATCTTCAGTCTGCCCCCTGAGCTGGTTTTGGAGGTGCCCATCACACACCCCACGCTGCCCTGGTTTGCAGAGCTGAATCTGCGGTGGTATGGCCTCCCTGCCGTGGCTAACATGCTGCTGGAGATCGGTGGGTTGGAGTTCACTGCTACACCCTTCAACGGCTGGTACATGGGCTCCGAGATCGGCGTCAGAAACTTCTGTGACAACTACAGATACAACATCCTGGAGgAGGTGGGGCGGCGCATGGGTCTGGACACCAGGAAGACCTCGTCTCTGTGGAAGGACAAAGCCATGGTGGAGATCAACATTGCAGTGCTGCACAGTTACCAGcAGGCAAAGGTGACCATAGTGGATCACCATGCGGCCACCGAGTCCTTCATGAAGCACTTGGACAATGAGTACCGTGCGCGAGGAGGCTGCCCGGCTGACTGGGTGTGGATTGTCCCTCCGCTGTCCGGCAGCCTGACCCCTGTCTTCCACCAGGAGATGCTCAGCTACATGCTGTCGCCCACCTTCCTGTACCAGCCAGACCCCTGGAACCTGCCCGGATTCAGTGCAAAGAAGAAGATCACCTTCAAAGAGGTTGCAGAGGCTGTGAAGTTCTCCGCTTCCCTGATGGGCCACGCCATGGCACGGAGGGTGAAGGCGCGGATCCTGTACGCCACGGAGACGGGGCGCTCGCAGACCTATGCGAACATGCTCAGGGACATCTTCAAACGAGCCTTCGCCCCTACGGTGGTGTGTATGGATGACTACGACATCGTGAACCTGCAGCATGAGAACCTCGTCCTGGTGGTGACCAGCACCTTTGGAAATGGAGACCCTCCTGAGAATGGAGAGGTAACTGCCCACCCCATTACCGTCAAGCTTTATGTGTGTGAGATGTTCTCCAAAGCCCTGATGGAGATGTCACACCCCAGCTCGTCCGAGTCTCAGCAGAGGAGGAGCTACAAGGTTCGTTTTAACAGCCTGTCCAAGATGGATGACATTCTGGAGCACTTGAAGAGAGGACCTCGGCTGTCCAGCAACACGGAGAGTGCAGGACCACTGGGGACCATGAGGTTCTCTGTGTTCGGATTGGGCTCACGGGCGTACCCGCACTTCTGCGCCTTTGCCCACGCGGTAGACACACGCTTCGAGGAGCTGGGGGGCGAGCGCATCCTGGAGATGGGGGAGGGCGACGAGCTGTGTGGCCAGGAGGAGTCCTTCAGGAATTGGGCCAAGGGTGTGTTCAAGGCGGCCTGCGAGACGTTCTGTGTGGGGGAGGAGtctgagctggaggaggaggaggatgtgTTCTCCAGCGAATGGCAGCCCCACACCTACAGGACCGTCATCAGGGCCACGCCTACCACCATAGTCACTGCTCTCTCCCAGCTGCACAAGAAGAAGGTGTTTGAAGCAAAGGTCATCTCTACACACAACCTGCAGTGTGACAAGTCCAGTCGTGCCACAGTGCTGGTGAAGCTGGACTCTGGGGGTCAGAGGGAACTGCAGTACCAACCTGGTGACCACCTGGGCATCTACCCCACCAACCCCCAGGGTGTGGTGCAGGCGGTGCTGGCCCGAGTGTGCGACCCACCGCCCGTTAATGACACCGTCACCACAGAGAGCCAGAAGGAGAGGAATGGTAACCACAGCATGCCTCTGGTCTGGAGTGTCTGGGTGGAGGATGGAAGGCTGCCCCCCTGCACCTTCATGCAGGCCCTGTCCCACCTGCTGGACCTCAGCAGCCCCCCAGCGCCACCCCTGCTGCGGCTCCTGTCCCAGCTGGCCACGGACCAGCAGGAGCGTTTGCGCCTGGAGACACTCAGCCAGGCAGGGGAGCAGTACGAGTCGTGGCGCTGGGAGCACATGCCCACGATGGCGGAGGTGCTGGAGGAGTTCCCCTCCGTCAGCCTGCCCTCTTCCCTGGTGCTCAGCCAGCTGCCCCTGCTACAGCCGCGCTACTACTCCATTAGCTCCTCCCCCCTGGCCTGCCCCGGCGAGATCCACGCCACCGTGGCAGTGGTGCAGTACCGCACACAGGGTGGACAGGGACCCTTGCACTATGGCATCTGTTCCAACTGGCTGAACCAGATCCAGTCAGGCCAGCCGGTGCCGTGCTTCATCAGAGGGGCCCCTTCATTCCGCTTGCCCTCGGATGACTCCACCCCTTGCATCCTGGTGGGACCCGGAACTGGCATCGCCCCCTTCAGGAGCTTCTGGCAACAGCGGCTCTATGAGATGGAGCAGCTGGGCAGGAGACCGCGGGGCTTGGTGCTGGTGTTCGGCTGTCGGCAGGCTGAGTTTGACCACATTTAcaaggaggaggtggaggatgCCCAGAGGAGGGGGGCGATCAGTGCTGTCTACACTGCTTACTCCCGGGAGCAGAGCATTCCCAAGACGTATGTGCAGGACTTGCTGAGGCAGCAGCTGGTGGACACAGTCTGTGAGGCGATGGGCCCAGGCGGGGGGCACATGTTCGTGTGCGGCGACGTCACCATGGCCAGGGATGTGCTGGCCACTGTGCAGGACATCTTGGTGGAGCGCTGGGGCATGAGTGACAATGAGGCGGGCAGCTACCTCACCAGGCTCAGGGACCGGGCGCGGTATCACGAGGATATCTTTGGGGTGACGCTGCGCACCCATGAGGTCACCTCCCTGATCCGGTACCGCTGCCATTTCCTGGAGGAGAAGAAGCCATTGGGGCCGGAGCTGTGACAGGACACCGGCTGGATCAGATACATgaacacacattgacacacatacacaacactcGTGCTTCGGTCACATCACTCGGCCCCATTTTCCCATAGCAACACACAACCCTTCAAATGAACAAGAGACagcattcacacagacccacacataTACAACTGATCTAATAAAGCTAagcataaaaatacaaagatcttcaattttaattgtttaacgAATtcctaaataattaaatccataAATGAATCTCTCGAGACTCTCAGGTTGCCCTTCTGTTCTCATGCAGCCAGataaaaactttaattttgtaCAGTGCTTTgagatatataaaatacagcttCTATATTCTATATCCATATGCTTTCAACCCAGTGTGCCTCTGGGAGAGCCGTTTCACCTCCAGCTCACCTCTTCACTGCGTTGGTTAAAGTGCGAGATTGTAGAAGTGcttgtaatttatatattttattttatttcttctgccTCTTCTCCTTTATAATAAGATTTACTGTATATAAGACTCAAGGTGGTGGTTCTTTCAGGGagtgttttcttatttgaaatattaaaccaAGTATGtattacaaacaacaacaataaatgtcTGGTAGTTTTGTGAAACTCG

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0045776 negative regulation of blood pressure biological_process
GO:0007263 nitric oxide mediated signal transduction biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048668 collateral sprouting biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005829 cytosol cellular_component
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0043168 anion binding molecular_function

KEGG:

id description
K13242 NOS3; nitric-oxide synthase, endothelial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002379 True 4182 mRNA 0.57 26 12226849 12241355

Neighbor

gene id symbol gene type direction distance location
AMCG00002378 NA coding upstream 15530 12204021 ~ 12211319 (+)
AMCG00002371 ptpn23,LOC106597002,LOC107591991 coding upstream 105072 12106189 ~ 12121777 (+)
AMCG00002372 NA coding upstream 122283 12101806 ~ 12104566 (+)
AMCG00002370 NA coding upstream 139025 12081626 ~ 12087824 (+)
AMCG00002369 pdp1 coding upstream 145267 12079963 ~ 12081582 (+)
AMCG00002381 NA coding downstream 931 12242286 ~ 12243888 (+)
AMCG00002380 NA coding downstream 3368 12244723 ~ 12246989 (+)
AMCG00002386 NA coding downstream 397131 12638486 ~ 12696128 (+)
AMCG00002391 NA coding downstream 780212 13021567 ~ 13024109 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding downstream 830071 13071426 ~ 13085078 (+)
G122744 NA non-coding upstream 96102 12129878 ~ 12130747 (+)
G122743 NA non-coding upstream 97171 12128380 ~ 12129678 (+)
G122737 NA non-coding upstream 121326 12104670 ~ 12105523 (+)
G122592 NA non-coding upstream 369523 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 510148 11716355 ~ 11716701 (+)
G122829 NA non-coding downstream 131446 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 163587 12404942 ~ 12411141 (+)
G122868 NA non-coding downstream 810670 13052025 ~ 13052390 (+)
G122876 NA non-coding downstream 825910 13067265 ~ 13067635 (+)
G122911 NA non-coding downstream 946594 13187949 ~ 13188278 (+)
G122746 NA other upstream 86384 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 210765 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 328148 11894473 ~ 11898701 (+)
G122582 NA other upstream 390680 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 511477 11710450 ~ 11715372 (+)
AMCG00002390 NA other downstream 790404 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 803338 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 884023 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2086277 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 4716806 16958161 ~ 16960082 (+)

Expression


Co-expression Network