AMCG00002380


Basic Information

Item Value
gene id AMCG00002380
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12244723 ~ 12246989 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002380
ATGTCTGGGCTGCAGTGGAGCGGAGGCTGTGAGAGACTCATTCAGACGTCCACCATGTTCCCTGAGCCACTGGCTGTCCTCCTCGCCCTCCTGCACCTCCACGGCACGGGTGTGCATGGCGAGGGTTGGTCTATTAAGGTGCCCTCAGAGGTGCGGGCGGTGGAGGGATACCCCGTGGTGCTGCCCTGCACCTtctcccacccccaccacacGCGGCACTCTGCCCTCCTGGCCCTGTGGAGGCTGGGCCCCAGCGCCGGCGGCCACGTGGTGTTCCAGTGCAGCAGCCACAACGCCAGCGACGGCTGCCGGCCCGGGCACAGCCAGGACCCCCGCTACCGGCTGGAGGGCGACCCGCGGCAGCACGACCTGTCCCTGCGTATCCACAGCGCCACCCTGCAGGACGCCGGCCGCTACTACTGCCGCTTTGAGCTGCCCGGGCACCTGGGTGCCAGCTTTGAGAACAAGATGGGCACTCTGTTGCGTGTGGAAGCCCCACCACGGATCTTGCAGCTTTGGTTGGAGGGTGGCGTGGAGTCGGGGTTCAGGGCCCTGTGCCAGGCCCAGGGGTCCCCTCTGCCAGTGGTTCAGTGGACTGGACCTGATCAACATCTGGATTACCTCCCCTCCTATGCCAGCCCCAGCGGGACTCACCAGGTCACTCGGGAGCTGAGGAACCTCACCCACGGGGGGCCCTTCACCTGTCTAGCCACCAACCCTCTTGGCACAGAGCGGGGCACCCTCTACCTGCTGCCTTCCGATGCCCCGCTGACAACCCCCCGGGCCCCAGCTGTGCCCCCAACCCCCGCCCCTGTCctactgctgctgctctgcCTCTCGCTGGGAATCAAACTGCTCCTGCTGCTGGCGGGGGGGGGCTGGCTGCTGGGGCGAGGAGGGGCGTTCCGTACCCTCCAGCCCTGA

Function

GO: NA

KEGG:

id description
K16352 SIGLEC15; sialic acid binding Ig-like lectin 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002380 True 924 mRNA 0.68 3 12244723 12246989

Neighbor

gene id symbol gene type direction distance location
AMCG00002381 NA coding upstream 835 12242286 ~ 12243888 (+)
AMCG00002379 NA coding upstream 3368 12226849 ~ 12241355 (+)
AMCG00002378 NA coding upstream 33404 12204021 ~ 12211319 (+)
AMCG00002371 ptpn23,LOC106597002,LOC107591991 coding upstream 122946 12106189 ~ 12121777 (+)
AMCG00002372 NA coding upstream 140157 12101806 ~ 12104566 (+)
AMCG00002386 NA coding downstream 391497 12638486 ~ 12696128 (+)
AMCG00002391 NA coding downstream 774578 13021567 ~ 13024109 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding downstream 824437 13071426 ~ 13085078 (+)
AMCG00002394 NA coding downstream 842427 13089416 ~ 13090383 (+)
AMCG00002400 NA coding downstream 893678 13140667 ~ 13141587 (+)
G122744 NA non-coding upstream 113976 12129878 ~ 12130747 (+)
G122743 NA non-coding upstream 115045 12128380 ~ 12129678 (+)
G122737 NA non-coding upstream 139200 12104670 ~ 12105523 (+)
G122592 NA non-coding upstream 387397 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 528022 11716355 ~ 11716701 (+)
G122829 NA non-coding downstream 125812 12372801 ~ 12373031 (+)
G122830 NA non-coding downstream 157953 12404942 ~ 12411141 (+)
G122868 NA non-coding downstream 805036 13052025 ~ 13052390 (+)
G122876 NA non-coding downstream 820276 13067265 ~ 13067635 (+)
G122911 NA non-coding downstream 940960 13187949 ~ 13188278 (+)
G122746 NA other upstream 104258 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 228639 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 346022 11894473 ~ 11898701 (+)
G122582 NA other upstream 408554 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 529351 11710450 ~ 11715372 (+)
AMCG00002390 NA other downstream 784770 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 797704 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 878389 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 2080643 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 4711172 16958161 ~ 16960082 (+)

Expression


Co-expression Network