AMCG00002389


Basic Information

Item Value
gene id AMCG00002389
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12982829 ~ 12997422 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002389
ATGTCTCCTCAGGGGTGGCTCCTTTGCCTTATTGCTGTCTCCTCAGCATATGCCGTTAGTGATCCCCCAATTACCTTTGATGAAGAAGTATTGCTGGACTTGCtgAAACTGAACAGCACTGAGAAAATCCCAGGGGTCTGCTATGTCTGCAGGACTGTGGTGACTGAGGTCAGGAGAATGTTACCGGTCAACGATACCAAGCAACAGATCTGCAGAGTTCTGGAACATGTCTGCCAGACGACACATGTGTTGAAGTTCCTGTGTCACAGGGTTGTGAACAACTACATCAAGCAGCTGGTGGAAAACATCTTGCTGCACAGCAGCCCCAGGGCCATCTGCCGGGCCATCCGCCTCTGCTGGTGGTGAAGCTGGGCTGCCGAGCCCCTCACTCACATTGCTTCTCCCTTTCCTGCTAATGTAAAGCTTTATATTTCACATGCAATCATTCAGTCAAGATCTGAATATGTGCACAATCAATGAGGCCAAACCAAAAATAGTAAAGTTAAAATTACGTGACAATTATgatattttcataattgtatgtctatatatacagtaacatatatataaatatttgtttaaaaaagtaaaaggttTTCCAGATTTCATAATATTATGAGTTGAAATGAAAGTGACTTGCCCACATCGTCAGTGATGATTGTGAGAAGCGATAAGGTTCTGCCCTGTAACGACTTCCATTAATGCAAAAcggctgcttttttttttttctgaagagtgagtgtatatgtaatgtAGCAGAGTCAATAAAGCAAGCAACAACTTCACCAAGCTCCTGTGTTTCTGTGACTGAAATCATGAGTCAAAGAGCTACACATGGCTATTACAGCTGCTGGTGACACAGAGGGAAGACAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002389 True 876 mRNA 0.43 4 12982829 12997422

Neighbor

gene id symbol gene type direction distance location
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding downstream 478803 12483894 ~ 12504026 (-)
AMCG00002383 NA coding downstream 722423 12251292 ~ 12260406 (-)
AMCG00002384 NA coding downstream 733883 12248147 ~ 12248946 (-)
AMCG00002382 smarcc1,LOC106605342,LOC106581105 coding downstream 779803 12185034 ~ 12203026 (-)
AMCG00002374 NA coding downstream 811148 12145146 ~ 12171681 (-)
AMCG00002392 NA coding upstream 35207 13032629 ~ 13044363 (-)
AMCG00002398 NA coding upstream 96642 13094064 ~ 13102528 (-)
AMCG00002395 NA coding upstream 121058 13118480 ~ 13121283 (-)
AMCG00002399 NA coding upstream 154167 13151589 ~ 13152326 (-)
AMCG00002396 NA coding upstream 154946 13152368 ~ 13179775 (-)
G122801 NA non-coding downstream 738915 12195920 ~ 12243914 (-)
G122726 NA non-coding downstream 937810 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 1118773 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 1123504 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 1134637 11847081 ~ 11848192 (-)
G122858 NA non-coding upstream 3419 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 54604 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 69799 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 71412 13068834 ~ 13069238 (-)
G122897 NA non-coding upstream 144446 13141868 ~ 13147672 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 976477 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1109967 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1127938 11848470 ~ 11854891 (-)
G122597 NA other downstream 1248505 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 1297740 11647911 ~ 11685089 (-)
G122862 NA other upstream 30775 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 651805 13649227 ~ 13654247 (-)
G123263 NA other upstream 1943838 14941260 ~ 14946311 (-)
G123585 NA other upstream 3838734 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3960740 16958162 ~ 16974301 (-)

Expression


Co-expression Network