AMCG00002397


Basic Information

Item Value
gene id AMCG00002397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13182721 ~ 13186037 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002397
ATTTGCAGCTGCAGTTGCGCATGGATTATTTCATActagtttgaactgttttcatTATACTTATTACCTATGCTTTTTATTATGTGGAGAAATTGATCAGTACATGTGTGGACATACGTCTAGAGAGACAAGTGACATTAAACGGAGAAAACaggcctgtttgttttgtgaggTCATGTAAGCTATTTTTCGTAGCCTGTATTTTCTTCTACGCTTGCCGGGAAGCAGCGTGTCCTTTTAAACAGTGCATTATTCCGTACCTTATCCAAGGGAgttgtgtgtaaaatatgtctgtacctatttctttctatttgtgTGCTTATAGTACCATCAACAAAAGTTGCTGAGATGAGATTTATACGAGTCACACACCCATGCCCATGCATTATATTGCAATCCGTGCGCCGGATGAATGCGTGACGTCACGGGAGGGAGAGGGTCGCTTTCACTTTCGGTTCAGTCGGTCTGACGAGCGGTCCTGCGACAGAGGGGCTGCACCCCCAGGGCCCCACTGTGAAACACGCAGACTCTGTCCATGGCTGCGGACACCAGGACTATCCAGGTCCTCCAGGTTCCCAGTGTCCTCCATGATGACCGGATGATTGACAAGCTGATGATTCACTTCTTGCGACCCCGGCATGGAGGAGGGGAGGTGCTGCAGGTGCTCTACCCAACAGGCACGCCTGGACAGGCCCTTGTGACCTTTGAACTGCAGGAAGtgGCTGATCGTGTGGTGCAGCGTCCCCACGTGTTGCAGCTGCAGGAGCAGAGTTTCCCTTTGAAGGTCAGCAGGGCAGACAGGCCTGAGGATAACTACCTGTTCCTGGAGGGCTCCTTTCTGAAGCTACGCGCAGTCAGGACTCGACTCCAACAGCTGCAGCTCGCCCTCCCCGGAGAGCAGGTGCGCGGCCCCCCAGCCCAGCACTATCCCCCACACCTTCCCTCTGGAGAGCAGGGCTCTTCCAGGATGCCCCGGCTCAACGGTCAGGCAACAGGGGCCGTATCCAAAAGCAGAGTCTCCCGGGAGCAGTACGATGACCTTGGCGCTGACACCGCTGTGAGCCATCACAGCAGCCACTCTCTCCACAATGGCAGAGGTCTGGGGTCCAGCCGTGAATCTCTGCACAGCCCCGCTGCCTCTGCTTCCACTCTCTCCTCCCCTGGTCTCTCGGGGGGCTCATCCTTTCAGTGGTCGGAGCCCTCCACTCCTTGGAGCCCCAGCCGGTATAGCAGGAACCCCCTGGAGGTCTCTTTCCCCATCGACACGAATACTCTCCGCTACGCCCAGAGCTTACAGAAGCAGGAGCTGCAAGCGATCCTGGAGCGACACGCTGTGCAGTTGAGGGTGAAGGAAGACAAAGAGATCAGCACCGTGACCCTGACCCTCGCCCAGGGCAGCCGGGACGCCGACCGGCACAGAGAACGACACAGCACCCTGCAGAGTGCCCAGGACCAGCTGTTGGACTTCCTCTTGAAGGTCAAAAAGAGTCTGCGCACGCAGGTGATCTCCCCCTTTGACGTCCAGCTGTCTCGTGCTCAGAGACTGGCTGATGTCTACAAGGTTCTGGTGGACCAAGTCGGGGACAGACTCCTGCTAGTGGGCCCATCCAGAGAGAGCTATGAGCTGAAGCAGATACTGCAGGGAAACATGGTCAGTTTGCCAGCAGCGGGGCGTCAGGGTAGGGGGGAGCGAAAGGCTACGTCGGTGATGAGGAGCTCCTCTCTGCCCCGACAGCCCAGCTGGACAGATGTCAGGGGACCCGAGCAAGAGTCCGCCAACGCCAAGGGATACTCTCCGGCCAGGTACCAgaaggagcaggagcaggagcaggggGCGGCAGGATCAGGCCCTTCCCTGATCAGAAACTCGTTCAGGAGGAGAAGCAACTCAGAGTCCCGCAAAAAGATTAAGACAGGGCAGGCGCAGGGCCTGGGCAGCCCAGtgggcacagacacagacaaagagGTCCACACTGAACGAGTGACAGGGAAACACAAAACAGGGATGCCAACCCTCAAGAAGACCTTGGGAAAAATTAACAATACACTTAGAAATACATCCTGGAAAAAATAA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002397 True 2074 mRNA 0.56 4 13182721 13186037

Neighbor

gene id symbol gene type direction distance location
AMCG00002396 NA coding downstream 2946 13152368 ~ 13179775 (-)
AMCG00002399 NA coding downstream 30395 13151589 ~ 13152326 (-)
AMCG00002395 NA coding downstream 61438 13118480 ~ 13121283 (-)
AMCG00002398 NA coding downstream 80193 13094064 ~ 13102528 (-)
AMCG00002392 NA coding downstream 138358 13032629 ~ 13044363 (-)
AMCG00002403 nacad,LOC107579097 coding upstream 10788 13196825 ~ 13213803 (-)
AMCG00002404 NA coding upstream 33571 13219608 ~ 13227144 (-)
AMCG00002405 ccdc12,LOC102782761 coding upstream 52706 13238743 ~ 13249851 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding upstream 146958 13332995 ~ 13369397 (-)
AMCG00002411 NA coding upstream 191130 13377167 ~ 13384055 (-)
G122897 NA non-coding downstream 35049 13141868 ~ 13147672 (-)
G122879 NA non-coding downstream 113483 13068834 ~ 13069238 (-)
G122877 NA non-coding downstream 115094 13067221 ~ 13067627 (-)
G122869 NA non-coding downstream 130331 13052026 ~ 13052390 (-)
G122858 NA non-coding downstream 177386 13000841 ~ 13005335 (-)
G122942 NA non-coding upstream 99300 13285337 ~ 13286312 (-)
G122945 NA non-coding upstream 103004 13289041 ~ 13289249 (-)
G122946 NA non-coding upstream 103271 13289308 ~ 13289916 (-)
G122947 NA non-coding upstream 105089 13291126 ~ 13291819 (-)
G122948 NA non-coding upstream 106284 13292321 ~ 13292568 (-)
G122862 NA other downstream 153315 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1176369 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1309859 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1327830 11848470 ~ 11854891 (-)
G122597 NA other downstream 1448397 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 463190 13649227 ~ 13654247 (-)
G123263 NA other upstream 1755223 14941260 ~ 14946311 (-)
G123585 NA other upstream 3650119 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3772125 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4503971 17690008 ~ 17706289 (-)

Expression


Co-expression Network