AMCG00002404


Basic Information

Item Value
gene id AMCG00002404
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13219608 ~ 13227144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002404
CATAACTATGCGACCACGGCAGTCGGTAGCAACCCATGTGAATGTCGCTTGTGTAAATTGACAAGGCAGAGTGAGATGAGGCAACAGTTTGTCCTGTGGTGAAGTAGGCTGCAGTGCCTGCATTAATTTTCATAATGACATCACGACTGCTAGGCCGCTGTGCCCGACTGCTGGGGCAGTGCTCACAAGTTCCTGTGGCCTGGGTCAGACCCCTGGCCCCTCCTGCCCTGGCAGAGCCCCTTCCTGCTCTGGCCTTGCGCTTGCCCACACCTTGCCCATGGCGGACACTGTGTGTAGCAGTGGATGAGGGGTACCAGCCGGCACCTGATCGCACAGAGCTGGATCAGCTGCTGGAGGGGGCGGGCACCCCTGGGGAACTGCTGCAGGTCTGGGAGGAGCACAGGGGCACTGCCAACCAGGCTGCCAGTGCCCTCACCCAGCTGGCACGCCTCACCATAAGCAAGGGGGTCAGAGACAAGAGGGAGATCACCGACAACACTGAACTCTTCCTTGACCCTCGCTTCCAACATCTGCTGCAGACGGTCAACTCCCAGGTGTCCACAGTGTGGAATGGCTCCCTGGTGGCGTTGGTGCGGGCGCTGTCTCAGCTTGGCATGTCCCCTACAGCCCCGGCCCTGCGCTCACTGCAGACCGAGGCACACTGGCGCCTGCGCAGACTGAGCTACAAGCAGCTGGCCGTGCTGGCGGACTGGGGCAGCATAAGGCAGCGCGCTGGCCAGGAGGGGGCACTGCTGGGAGATGTGCTAAAGCAGCTGGAGCTGCGCTGGACGGAGATCACAGAGCCCCGGACCCTCGCCCTGCTCATGAGCCACGTGGGGCACCTGTCACCCCCTCTCATGGAGCGCCTGGAGGACAAGgctCTGGAGTTGGCGGAGCGGTTCAAGCCAGAGGACATGCGACGTGTTGCCTTGGCGCTGGCGGTGGGAGGGAGGCGCTCAGTGCCGCTGCTCAGGGCGCTGTCCTACCACCTGTTGCAGAAACCGGGCCTGGAACTGCCCACGCCCTTGCTACTGGACCTGGCCTTTGCTTatgGGAAGCTGAATTTCCAGCAGACCCAGCTGTTCCAGCGCATCGCCGCCGAGCTGCTGCCCAGGCTGCCCGAGCTCAGCCCCAACCAGGTGGTGCGCTGTGCCAAGTCCTTCACCTTCCTCAAGTGGCTCCACCTGCCGCTGTTCGAGGGCTTCACTGAGcaTTTCCTGCAGCACAGTGAGAACTACAGCGCCACCCAGCTGTGCAACCTCATCATGGCATTCGCTCGCCTCAACTTCCAGCCCAGCCAGGGGGACGCCTTCTACAGCAAGGTGATGTCCAAGCTGGAGGGAGTGCTGCACCGCCTGGCCCCTGTGTTGCACATGGATGCGGTGTGGtccctgtgtgtgctgcagcAGACTCGGCCTCAGCTCCTGCGCCCCCTGCTGGAACCCAGCTTCCACTGCACCCTGACGAAGGGCAGCCCCTCACACTCTGAGGGATACAGGCTGAAGCTCCTCCACATCGCAGCCGCCCTGGAGCTGGAGTGTGGGGAGCCCCGGGCCGCCCTCCCTGCCCCTtacaccaccacccccaccaccacccgtGACAGCCGTCCGTCGACGCTCCAGACCAGCCTACAGGAGGCGCTGCAGATCCTGACAGGGGGGGAGGAGGGAGCGTACCGCACGGCTGTTAACACGGTGTATGGCTGGCCCATCGATGGAGAGCTGGTCCTGGACTCGGAGAGCAAACCTCTCCGTCTGGACAACCTGAGTGCCCCCCACCTACCTGGGGGCGGCGGGGGCACTCCTCTGCCCGAGGGGGCCAGGAGgataGCAGTGCTGGCGAGGGAGTTCCCTCACTACAGCTCGCGCAGCAGGGAGCTGCTGGGCCGCTATGTCATGCAGCAGCGACACCTGCGCTTGGCCGGCTTCCTCACTGTGGAGGTGCCGTACTTTGAGTGGCTAGAGCTGAAGTCTGACTGGCAGAGGGTGGCCTGCCTGAAGGATAAGATTGGGAAGGTGGTGGCAGAAGAGATGGCCAAGTAGAACCTGGACTGTCTGCAATCTTTTGACAAAAGCAAATtcccacaaaaacaacacaacgaCAACTCAGTGAAtccaaaacaacagcagcagcagcagcagcagcagcagcagctctaTCAGCAAGAATAACATAGATTTGTGAGCCCCTGTCTGAGGGCGTCCTGGCAGCCCTTGCAGATCCATTGTCCGGACTTCTGGTCACCTAGACAACCATCTGGGGGCATTCCCTCTCACCATGGAGACagctgcgggggggggggggggggggggagtgtgcCAAGAGAACAGCTCGGCACAGCGCAGAGTAAGTGGGTGTAGGAGGCTGTGTCGAGGGGGGAGGTGACTAGCTGGAGCGGTGAGGTGTCCCTGCACCCCCCTCTCGGTGTCAGAGTGGGGGGGTGACGTGTGTTAAGTCCCCGTGTTCCCAGGCAGACAGTGAGCTGATGTTTTGTTGGCTGTAGAAATAAAGCGAAAGGGATTTGAAACACTGCAGCTCTCAGGGCTTCGGTCATCCACAGAAACCTCACAGGACTGATTCTAAAAATGGGATTTAGCTGCTGTCTAAGGTGCAGTGCTAGTAACAAATAATCGTCATAATAAAAAAGCtagtatttaatttgcattggtATCgcagtgttttatttcatcTCTATAACCCTCCAGCCAGTCGGGTCAGGGGCTGGGGGCTGGCACTTGTTCTTTCTGTGTTGTCATTGGGGCTTGTTTCGATTTTGCTCACAGGAGTGAAACTGTCCCCATGTTGTAGTAAGTGGGCCCgtttcatttttaatgctgCACATTAAAAAGTACACCATC

Function

GO:

id name namespace
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002404 True 2858 mRNA 0.60 11 13219608 13227144

Neighbor

gene id symbol gene type direction distance location
AMCG00002403 nacad,LOC107579097 coding downstream 5805 13196825 ~ 13213803 (-)
AMCG00002397 NA coding downstream 33571 13182721 ~ 13186037 (-)
AMCG00002396 NA coding downstream 39833 13152368 ~ 13179775 (-)
AMCG00002399 NA coding downstream 67282 13151589 ~ 13152326 (-)
AMCG00002395 NA coding downstream 98325 13118480 ~ 13121283 (-)
AMCG00002405 ccdc12,LOC102782761 coding upstream 11599 13238743 ~ 13249851 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding upstream 105851 13332995 ~ 13369397 (-)
AMCG00002411 NA coding upstream 150023 13377167 ~ 13384055 (-)
AMCG00002415 NA coding upstream 179208 13406352 ~ 13411130 (-)
AMCG00002416 NA coding upstream 187156 13414300 ~ 13430384 (-)
G122897 NA non-coding downstream 71936 13141868 ~ 13147672 (-)
G122879 NA non-coding downstream 150370 13068834 ~ 13069238 (-)
G122877 NA non-coding downstream 151981 13067221 ~ 13067627 (-)
G122869 NA non-coding downstream 167218 13052026 ~ 13052390 (-)
G122858 NA non-coding downstream 214273 13000841 ~ 13005335 (-)
G122942 NA non-coding upstream 58193 13285337 ~ 13286312 (-)
G122945 NA non-coding upstream 61897 13289041 ~ 13289249 (-)
G122946 NA non-coding upstream 62164 13289308 ~ 13289916 (-)
G122947 NA non-coding upstream 63982 13291126 ~ 13291819 (-)
G122948 NA non-coding upstream 65177 13292321 ~ 13292568 (-)
G122862 NA other downstream 190202 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1213256 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1346746 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1364717 11848470 ~ 11854891 (-)
G122597 NA other downstream 1485284 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 422083 13649227 ~ 13654247 (-)
G123263 NA other upstream 1714116 14941260 ~ 14946311 (-)
G123585 NA other upstream 3609012 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3731018 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4462864 17690008 ~ 17706289 (-)

Expression


Co-expression Network