AMCG00002405 (ccdc12,LOC102782761)


Basic Information

Item Value
gene id AMCG00002405
gene name ccdc12,LOC102782761
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13238743 ~ 13249851 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002405
CCAGGCTCTCCGGACTCCCAGCAGGGTGCGTAGCCAACAGGAACACCCTGAGCGGGGCAGCTCGATTGTCTCTGCGCTCGGCTGCCTTTGCCTGCATCGATGCAGTCGGTGCCGATGCCGACGCGCGGGGCATTGTGGGAAGATGGAGCGCTCCGTGGGCTCGCTGCAGGAGCAGGCGctgaagaggaaggagagactCAAGGCGCTGAGGAGCAAACAGTTGCAGGGGAGGGAGCCTGAGGATGGGGAGCCGGGCAGCAAGAGAGcattgggagagagagaggaacagcagcagcagcaggaagaagaggaggagaaacaCAGGGAGCTGAAGTTGAGGAACTACACTCCTGAGGATGAAGAGCTGCGGGAGAGACAGGTGCCCAAAGCCAAGCCAGCCTCAGtggagGAGAAGGTGAAGGACCAGCTGGAGGCGGCGAACCCCGAGCCAGTCATCGAGGAAGTGGATTTGGCTAATTTGGCTCCCAGGAAGCCTGACTGGGACCTGAAGAGAGACGTGGCCAAGAAGCTGGAGAAACTGGAGAAACGGACGCAGCGCGCCATCGCAGAGCTGATCCGTGAGTGCATGCGCCAGTACAGTGTGCCGTGA

Function

symbol description
ccdc12 Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human CCDC12 (coiled-coil domain containing 12).

NR:

description
PREDICTED: coiled-coil domain-containing protein 12

GO: NA

KEGG:

id description
K12871 CCDC12; coiled-coil domain-containing protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002405 True 610 mRNA 0.61 7 13238743 13249851

Neighbor

gene id symbol gene type direction distance location
AMCG00002404 NA coding downstream 11599 13219608 ~ 13227144 (-)
AMCG00002403 nacad,LOC107579097 coding downstream 24940 13196825 ~ 13213803 (-)
AMCG00002397 NA coding downstream 52706 13182721 ~ 13186037 (-)
AMCG00002396 NA coding downstream 58968 13152368 ~ 13179775 (-)
AMCG00002399 NA coding downstream 86417 13151589 ~ 13152326 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding upstream 83144 13332995 ~ 13369397 (-)
AMCG00002411 NA coding upstream 127316 13377167 ~ 13384055 (-)
AMCG00002415 NA coding upstream 156501 13406352 ~ 13411130 (-)
AMCG00002416 NA coding upstream 164449 13414300 ~ 13430384 (-)
AMCG00002417 LOC106605926,LOC106594359 coding upstream 208632 13458483 ~ 13478876 (-)
G122897 NA non-coding downstream 91071 13141868 ~ 13147672 (-)
G122879 NA non-coding downstream 169505 13068834 ~ 13069238 (-)
G122877 NA non-coding downstream 171116 13067221 ~ 13067627 (-)
G122869 NA non-coding downstream 186353 13052026 ~ 13052390 (-)
G122858 NA non-coding downstream 233408 13000841 ~ 13005335 (-)
G122942 NA non-coding upstream 35486 13285337 ~ 13286312 (-)
G122945 NA non-coding upstream 39190 13289041 ~ 13289249 (-)
G122946 NA non-coding upstream 39457 13289308 ~ 13289916 (-)
G122947 NA non-coding upstream 41275 13291126 ~ 13291819 (-)
G122948 NA non-coding upstream 42470 13292321 ~ 13292568 (-)
G122862 NA other downstream 209337 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1232391 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1365881 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1383852 11848470 ~ 11854891 (-)
G122597 NA other downstream 1504419 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 399376 13649227 ~ 13654247 (-)
G123263 NA other upstream 1691409 14941260 ~ 14946311 (-)
G123585 NA other upstream 3586305 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3708311 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4440157 17690008 ~ 17706289 (-)

Expression


Co-expression Network