AMCG00002406


Basic Information

Item Value
gene id AMCG00002406
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13369311 ~ 13373738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002406
ttttttttaattccctctTCTCTCTGGTTGTGTAAAACGGAAACCGAAAGAAAGGCGACTTCCTGCTCGGCTCCCACAGCAGAGCACCACCCTCCCCCGCCGTAATCAGCGCGGCTCACCCCGGACGGAGAAGGAGGCCGTCGTGGCTCTCCGGGTGGAGCAATGCGGGTTCGTTAGCGCACGGAGCCGGTATTTTGTTCAGCCGGACAGCGGTGCGTCTGCGAGGAAGGCGCGGGAAACGTGTCCGCTCGGCCGGGCTCTCCAGAACAGGCGCATGACGTCACCCAGGTGTTTTGCACACAGCCTGCCCCCTGTGGTGTGAGGCCGTGCCCCCGAGTTTCCCCCCTCAGCGTGCCGGGCAGCATGTCGACTGTGTGGCTCCATGTGGGTCAGTGTGGGAACCAGCTCGGGCAGGAGTGGTGGCGGCTGGTGACGGAGAGACCAGGCCTGGACAAGACAGCAGACAGgtaCCCTTACAGGGGCAGAGATGGGAAGCTGGCCGCAGTGTGTGTGGACAGCGAGCCCAAGGTCCTGCGTGCCACTCAGAAACTGGTGCAGGGGGGGAGCCTCAGGGAGTCGAACGTCATCGCGGGGCAGGGAGGTCGTGGCAGCAACTGGGCTtacgGTTATCATGGGCAGCGGGGTGAGGGGGAGCGCGGGCTGCTGCAGCGCGCCATGGAGAGTGTGCGCCTGGAGGCGGAGCGGAGCGACTGCTACTGCGGCACCGTGCTGTTCCACAGCCTGAGCGGGGGCACGGGGGCAGGGCTGGGAGCTCGTCTGTGTGAAAAGATCACAGATCACATCCTGTCCGTGTCGGTGGCGCCGCACCAGAGCGGAGAGAGCCCTCTGCAGCACTACAACACCCTGCTGAGCCTGGCTGCGCTGCACAGTTCTGCAGACGGGCTGCTCCTGTTCCACAATGATGAGGCCCTAAGCCAGGCGCTGGCTGTGCAGACTCGGGGCCGGGCCGGACCCCCAGGCGCCCCTGCCCAGACCTCGCTGGCAGCCATGAACTTGCACATCTCCTCCTGCCTTGGAGGTCTGCTGTTGCCGGTACACAGTCTCACCACAGCCAGGTACCTCACCAATAGGAGGCAACATCGGGCTTCTGAGGAGAAACCGTGGGACTGGGGGGGAGGGGACCGGGGAGGTGtgctGCACTCATGGCTGTGTGCTCTCCGCAGTGGGCTGAGTCTGGGGCTGGAGCCCTGGGAGTTACTGAGGTCCGTCTGCCCCCTCCCTGCCGCCAAGCTCCTGCACACCAGCCAGGCCTGCAGCAGCGACGCCACTCCCTGGGAGAGCCTGGCATCTTCCAGCCTCAAGACTGTGCCTCCAAACTCCCCCTGTGGGGAGCCATACCACAGCAGGGCAGTCCTTGCGGTCGCCCGGGGAGACCGTGATGGTTCCTTCCTGTTGCACGCGCCCAGAATCCTCCACAATCTGAGGCAGGGCCACCGCTGTGTCCCCTGGAACCCCTTCCCAGTCGACTACTGGACTGACCCCCGGAGTGTCCTGAGGCGCCATCCCTCCCCGTCCTCGCGCTCCCTGACAGTGTGCTCTAACCACAGTGGGGCGGCCGCCCTGCTGCGGCGCGTGGACGAGCGCGTCAGGGTCATGCTTCACAGCCGGGCCTACCTGCACTGGTACCAGCGGTACGGCTGCGAAGAGAGCGACTTCCTGCAAGCGCTGGACACCCTGAAGACCGTGGAGCAGGAGTACAGCGTGGGGGCCAGGGGGCTCTCCGTGGGGGACACTCGGGGGGTGGGGATTTGA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002406 True 1773 mRNA 0.65 11 13369311 13373738

Neighbor

gene id symbol gene type direction distance location
AMCG00002409 NA coding upstream 40912 13307997 ~ 13328399 (+)
AMCG00002408 NA coding upstream 64755 13271681 ~ 13304556 (+)
AMCG00002402 NA coding upstream 131906 13228527 ~ 13237405 (+)
AMCG00002401 NA coding upstream 175235 13191029 ~ 13194076 (+)
AMCG00002400 NA coding upstream 227724 13140667 ~ 13141587 (+)
AMCG00002407 NA coding downstream 1842 13375580 ~ 13376288 (+)
AMCG00002412 NA coding downstream 15447 13389185 ~ 13406063 (+)
AMCG00002414 NA coding downstream 57098 13430836 ~ 13439194 (+)
AMCG00002413 NA coding downstream 67199 13440937 ~ 13455498 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding downstream 116440 13490178 ~ 13511283 (+)
G122929 NA non-coding upstream 63712 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 179449 13189282 ~ 13189862 (+)
G122911 NA non-coding upstream 181033 13187949 ~ 13188278 (+)
G122876 NA non-coding upstream 301676 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 316921 13052025 ~ 13052390 (+)
G123039 NA non-coding downstream 172326 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 192676 13566414 ~ 13570811 (+)
G123043 NA non-coding downstream 198781 13572519 ~ 13590681 (+)
G123169 NA non-coding downstream 991298 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 995355 14369093 ~ 14369913 (+)
AMCG00002393 NA other upstream 239614 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 298479 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 317340 13031759 ~ 13051971 (+)
G122746 NA other upstream 1228846 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1353227 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 953894 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3584423 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3602550 16976288 ~ 16985906 (+)
G123807 NA other downstream 4541698 17915436 ~ 17984730 (+)
G123989 NA other downstream 5458276 18832014 ~ 18838531 (+)

Expression


Co-expression Network