AMCG00002408


Basic Information

Item Value
gene id AMCG00002408
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13271681 ~ 13304556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002408
ATGGCTCAGTCAGTTCCTGTGCTGAAGCAGGTTCAATATGCGCAGGAGACTCCCAGGCGGCAGCAGCGTGTCACTGGCCCTCATGAGCACAGCCCCGGCAAAACCACACAGACGCAGCAAGATAACATCAGCCCTGCAGCAGCGTCAAGCTCCGCGGCACGGCCAGAGGAGTCGAGCTCCGAGATCCCCCTGTTGCCCCGGGAGGTGCTGGTGCTGCTCAGTACGCAGCTGTGGCACAGCGCCCTCCAGCTATCAGGCCAGGAAAAGCAAAGTGCTGCCGCCCACCCCTTGCTGCTCATCAAGTTTCTCATCATCATCTGCAGGAACATGGAGAACATTGACCCAGACAGGACACCTGGCTTCGTGTTTGAGACCATCAAGCTGCTGTCCTTCTGTATGGCACAGcTGAAGAAGCAGCCTGAGGACCAGGAGCAGCTGGCATCTGTGGTGCTGCACGGCCTGCTACTGCTGGAGAGCCTCTTCGACCCCTATCAGACCTGGAGGAGACAGCTGGCTGGAGAGGAGGTCAGCCTGCTGGAGCGGAGCAAGTACAAGTTCTCCCCGCTCCCCCTACCAGAGGAGTTGCCTGCTTTCTTCCACGAAAGCCTGCAGGACAGCGAGAGGCTCCCAGAGCTACTCAGGCTGCGACTGGTCCATCTCCTCGGTGCAGTCATCAGTGGCAGCAAGAAGAATGGCCTGGCGTCCATCACACCTGTGGCAGTAAACGACCTCATGCACATGCTCACCTCCTGGTGTGAGCATGGTGCTCCAGAGCACAAGGACCCCCAGCTGCTTTGGATGACCTTGAAGTCCCTGACTACGATGATCCACCTCCTGCATGCCAGCAGCCTGGACCAGCGGCAGGTGGACATCAGGACTGTGCTGGAGAGCTATTTCCGACTCCTGAACTGGGACCGGCTGCCCAGCAGCCAGGGGGAGGGGCAGGGCGGGCACTGGGAGGACAACCTCATCACCCTGCGCACACACATGCTGAATGCCATTCCAGAGATGCTGAACTGCGCTGACCGGCCGGTGCTGCAGGCCATCTTCCTCAACAACAACTGCTTTGAGCACATCCTGCGGCTCGTCCAGAACAGCAAGCTCTATGAGAGCAGCGTGTATAGGCCGGACGGCGAGGGCGCATTCGACCTCACCACCCACTTACTAACCGAGATCGATGTGGACCAGgtgTGGGAGAAGGGCTCGGACTCAATCACAGTGCACGCCCTGGGGGTCCTCACTGCCATCATGAGCAACTCGCCCTCTGCAAAGGAGGTTTTCAAGGAGAGGATTGGCTACTCCCAGCTGTTTGACGTGCTGAAGAGCCAGGGCCAGCCAACCAGGCGGCTCCTACAGGAGCTGATGAACATGGCAGTGGAAGGGGACCACTCTCAGGCAGTGGTCCTGGGCATCAGCAATGACCAACccctactgctgctgctgcagtggATCCCAGAGCTGGAATCGCGGGACCTGCAGAGGCTGGTGGCACAATGGCTGGCGGGGTTATGCGGGGGCTCACTGCCCTGCCGCACGACCACTGTGGAGGCCGGCATGGTGGGCGCGGTGCTAGAGGTGCTGTCCCAAACGGAGCGTGTGGACAGGCAGTGTGCTGAGGCGCTGCTGGGGCTGCTGCAGGCCCTGGGCTCCCTCTCACTGCGCCCTGGTGAGCTGAAgagactgctgctgctactgagGGTGGAGCCAGGCGCCGGGACGAGGGTGCACCCTTACTGCGGGCGTGTGGTGCGGGCTCTGTCGGCCATGGCACTGCGGGAGGGCCGAGACGGCGCCCTGCAGTACTTCGACCTCAGCCCCAGCATGGCTGGCATCATGGTGCCCACCATCCAACGCTGGCCAGGGAGCAGCTTCGCTTTCCACGCCTGGCTGTGCCTGGACACTGGGAGACAGGTGTCGTCCGTGCCAGAcctcacccccaccacccccaccactcCCACCACCCCCACCGCTCTCAGCGCCCGCTTCACCAAGGGGCCACGCCGGAAACAGCTGTACAGTTTCTTCACTGCCAGCGGCACTGGGTTCGAGGCGTTCTTCACAGCGGAGGGGGTGCTGGTGGTGGCAcaCTCAGTCGATGTGGTGCACATCCCCGGCCGGCGGCCGTTTGGTCAGAACCTGGTCAGTATCTATGTGGACGGAGTCCTGTGTAGGACGGCCCAGCTCCGTTTCCCCGCACTCAATGAGCCCTTCACCTCCTGCTGCATTGGCTCTGCTGGGCACCggaccaccaccaccaactCGCCCACACTGCCgctgcccccccagcccccgcCCGAGCCCACCTTCCCCAGCCCCTCTCCACTCATACGCTCCATGTCCTTCCCGGCCTCCCTGTCATCTCCAAGCTGGGCCCCGCCTACCTCCCCCCCCGTGGACACGCCTGTGCACACCATCCCCGCCGGGATGCAGGACATGGAGTGGGGCTCCCCCACCTCCCTGGAGGGGCTACTGGGCACCACCTTCATCTGCCACGAGGCCCTGCAGCCGGCGCAGGCCCGCATGCTGTTCACTGCAGGGCCCAACAACGTGTCCCTTTTCAAACCAGATGGGGAGCTCTCAGACCTCAACAGCAAGCTACTGCTGTACTACACACCCAAGGCCTTTAAAAACCAGATCTGCCTGGACCTGTCTCCTGCTCATCAGTATGATGGGCGGCTCACTGGCCACAGGGTCATCAACTGGGACGTCAAGGATGTGATCAACTCcgtgggggggatgggggtgcTGCTGCCCCTGCTGGAGCAGGTGTGCgacctggaggaggaggagggagggggcagcCAGGAGACGTCTGACCTGCTGGGGCCCGAGCTGACCTCTGCGCGGGGGAAGGCCAACATGCTGCTGCCCCTGGGAAAGTCCTCAGAGGGCCGCCTGGAGAAGAACAGTGTTGCCGCCTTCCTCCTGATGGTGAAAAACTTTATGCGTCATCACCCGGCCAATCAGGAGAGCCTGCTGCAGTGCCACGGCCCCGCCATCATCGCAGTCATGCTCAGCAAGGTGTCCAGCACACGGATGGACATGTCCGTGCTGATGGCGTGCCAGTTCCTGGTTGAGCAGGTGTCCAGCGAGGGCAACAGCACGCTGCTTACCCAGCTCTATCAGCACCTGCTGTTCGACCTGCGCATCTGGAGCAGCAGCCACTTCGCCGTGCGCCTCGagcATGTGCAGTACCTGTCCACCGTCATCAGGCAAGGGAAGCAGCGGTTCCGCAGGAAGTACGGAGTGCAGTACATCCTGGACTCCATCAGGACACATTATGGTGTGGAGCGAGACGGTGGCCCCCTGTCTGACGAGCTGCGGACGGTGCAGACTGCGCTGTTCTCGCTGCTCAGCGAGTTCCTGGCAAAGTCGCCCACCCCTGAGGAGCTGCACAGTGTGCTGGCCTACACAGGCGCCGTGGGTGAGGAGCAGCAGATGATCAGTGTGCTGGATGTGCTGTATAGTCTGCTGCGCCCCCCGCCCCTCCGGGAGCAGCTGGTGTTGGTGCTGCTGGAGAATGCGGCTGAGCCCTTCAAGCAGAAGCTGAAGCTGAGGGACTGTGGGTACCTGGGCCTGGTCTGTAGCCTGGGTGATGCCCCCGTCACACTGACAACCATCCGCTGCCTCTACGAGCAGCTGTTTCACTTGATCTACTCAAGCGAGGACAATGTCAGGCAGCTGGCACGGCAGCTCGGCTGGCAGGACACACTGACCAAGCTGTACGTGAAGGAGTCATACGAGTCCCGCGCCACCAGCTTTTCTGACTCCAATCCCAGCTCCTTGGACAGCTCTCGGCCCAGCCTCCAGAGACAGGACAATGTGGTACTAGTGGAGACGCCCACCGATGTCTTCCCAACATTCagaatggaggaggaggaagaggaggtcAAGGCGCAGAAGGACCCTCAAGACATCTCGGAGGGTTTCTCTGACATGTCCCTGTCCCCTGTCAACGGCAGTCAAATGAAGAGCTTAGCCAACTCCATGAACTTCAAGTCCTTTGACTCGATGGAGCTGGCCAGCCAGTCGTCCTCGCAGTCCAACGCTGTGGACATCCCCACAGTCCAGTCTGACTTTGACCAGGGCCCCTACCTACCCCTGTCCCCCTTTGGCAGTTCCCCCTTCGAACTGGGGCTGGAGCTTGGGGAGGGCACGGGCTCGCAGACCCCTGTGAGCCAGGCCGACACACCCTCCCCCCTGGAGACCTGCAAGCCATTCCCCGGCCTGCGGGCGCGCAAGAGCTCCAGCCTGTCCAACGTGCTGGACGACAGCAGCTACAGCACTGAGCACCTGCCTGGGGACAACACCTCCAACACCTCCAACCCACAGCAAACCCCAGAGGAGGAGCTGTGTAACCTGCTGACCAACATCGTGTTCTCAGTGCTGTGGAGTGGCGTGGAGGGCAGCGAGGACGCTGTGTGGCGCGAGCGGGGGCAGGTCTTCTCCGTGCTCACCAAGCTGGGCTCCCACTGCCAGCTGGTGCGCCCCCCTGACGATATCAAGCGCAGCCTGCTGGAGATGATGCTGGAGTCCTCCCTGTCAGACCTGAAGGACGCTATGGGCGGCGCAGTCTCTGGACACGGCCTGGCCATCGTCAGGCTGCTGAGGCTGCTGCAGGACTTCCTGTTTGCAGAGGGCACTGACAACCAGGCTCTGTGGAGTgagaagACGGTGCTGTCCCTGGACTGGGAGGAGGTGTGCTTCCTGCTAGGCCGTCTGGGGACCCCCTTGGCCAAGGCTCTGGAAGTGGGGGGGCGGACAGAGGCCTTCTCACAGCTTGTGCCCATCGTGCGCACCCTCTTGGATCAGCACGCCGACCCCCCTGGCCTGCGCGCCCTGCTGCCCGGCCTGCCCCCCACCAACGGCAGCGCCACCTTCGCACAGGACCTGCACAGCTACTGTGGCACCCAGGAGTGGCAGGACTTCCTCTCACACCACgtgCAGCCCACCATGCAGCAGTATGAAGAGGACAAGTTTGGGAAGAGTCATGATCTCATGTCTAACTTCTGGAACTCGTGCTTCGACGCGCTAATGAGCACCGCACAGCGCCGGGACAAGGACCGAGCACACTGCCGGGCCCGCTTCCAGgAGGTGATCGTGGAGCCCTGTGTACGGCGGGTGCGCAGTGAAAACGCACGGTACTTCAGTGTGCAGAAACAGGCCACCAGCCACCAGGGGTCAGTGCTGCGGCACTGGAAATCTCTGCACAGACTGCTCAGCAGCGAGAGGGGTGCCTGGGCCCTGCGggtgcaGTCCGAAGTGAAGTGGAAGGTGTCCAGCGCAGAAACCTACTCCAAGATGCGTCTGAAACTGGTTCCCAACTACAACTTTGACTCCCACCAGGAGGCCAGTGCTCTCAGAGACAACATGGGTACTGATAACCGCAACCAGACGGAGACACTGCCCCTCGCTGTGGCCAAGGAGGCCAAGGTCAGCGATATGGAAGACGATCAGCTCAACGACGAGGACCTGCTGCACCTAGACAACCAGgtggaggcagaggaggagagtCAGCGGGAGAAGCTGGTCCTGTCAGAGGACTGTGAGCTGATCACCATCGTGGCGGTGATCCCAGGGCGGCTGGAAGTCACTACACACCACCTGTACTTCTACGATGGCAGCAGCGACAAGGAGGAGACTGaggagggtgaggGTATCGGCTATGATTTTAAGCGCCCCCTGTACCAGCTACGGGAGGTCCACCTGCGACGTTACAATCTGCGGCGCTCTGCCCTCGAGCTGTTCTTCATCGACCAGGCACACTACTTCATCAACTTCAAGAAGAAGGTGCCCCCTCTGTGCCACTGCACTAGGCTACAACACCGTCCCAATGCAGCACGACTGTcccactccacagtgctgcGGCTGTACTGCACCACTGTCCGAAATAAAGTATACTCCCGGATCCTGGGGCTGCGGCCCACCAACCTCTTCTACTTTGGGTCCCGGTCTCCCCAGGAGCTCCTGAAGGCCTCAGGACTCACACAGAGGTGGGTGTACAGGGAGATTTCCAACTTCGAGTATGAGAGTTTCGAGGACTCCACTGGCACTATCGACAAGTTCCACTACGGCACACACTACTCCAATGCAGCCGGAGTCATGCACTATATGATCAGGACTGAGCCCTTCACCACCTTGCACATACAGCTACAGAGTGGCAGGTTCGACTGTGCGGACAGGCAGTTCCACTCTGTTGCTGCAGCCTGGCAGGCCCGGATGGAGAGCCCTGCAGATATGTCTCAGGACAGCGTGAGTGACGTGCTGCTGCCGCGATGGGCCAAATCTCGGGAGGACTTCATCAGGAAGCACCGCAGAGCTCTGGAGTCGGAGCACGTGTCCACTCACCTGCACGAGTGGATCGACCTGATCTTTGGCTACAAGCAGAGGGGCCCCGAGGCCGTGGAGGCCCTCAACGTCTTCTACTACTGCACCTATGAGGAGACCGCGTCCCGCCGCCAGGCCCGCATGGACACCCTGCCACCCAACCTCTTTGAGCATCTCAACAAGCTGAAGGCGTTTGTGGAGGTGGTGAGCGATGGCGTGCCACTGGTCCAGGCTGTGGTTCCCCGAAACCAGACGCGCTCCTTCATCACACAGGGATCAGACCTGCTGgtgACAGTCAGTGCCAATGGCCTTCTGGGCACACACAGCTGGCTGCCATACGACAAGAACATCGCCAACTACTTCACCTTCACCAAGGACCCTACCATCTCCAACCCCAAGACCCAGCGGATGGTGTGTGGCCCCCTGTCCCCAGGGGCGGAGCTGGGCCCACGGGTGCTGGTGGTGTCCAGTGACGGGAGGCTGCTGTTCAGCGGGGGGCATTGGGACTGCAGCCTGCGGGTCACTGCGCTCAACAAGGGCAAACTGGTCGGACGCATCTGCCGACACATCGACGTGGTGACCTGCCTGGCCTTGGACCTGTGTGGAATCTATCTCATCTCTGGCTCCCGGGACACGTCCTGCATCGTCTGGCAGGTTGTGCAGCAGgggggATTCTCCAGCGGCCTGAATCCCCGGCCAGTGCAGGTTCTCTGTGGCCATGACCAGGAGGTCACCTGTGTGGGAATCAGCACTGAGCTGGACATGGCTGTCTCAGGGTCAAAGGACGGCACAGTGATAGTGCACAGTATCCGACGCGGGCAGTTTCTGCGCAGCCTGCGTCCGCCGTGCGAGGGCTGTCTGGGGGGCAGCGTGACGGAGCTGGCAgtgCGATCAGGGGCCCTAACTCGCCGGCTGTGGGGCTCCACCCGCAGGATCTCTCAGGTGTCCTCAGGCGAGACAGAGTACAACCCCCCTGACACTGCTAGGAAATAGAGGCCGGGCTGCACCTGCCATTGGTTGGGAAGGTGGGGGACAGGGCACGGGGCTGGGAATACAGACAGGCCTCTGGAGTAGAGGAAAAGAACACGAACCTTGAAAGGACATGGACAAGGATTGTAGGACCCATTCTTCTCCACTCccctcctgtcctctctctctcccgacCTTCCTCTCTTCCACTGTGACTTTACAGGGCCCCTCTCTGTTCCCAACCAAACTCCATCCGTCTCTCTCCAGTGCTTCTCCAGGGGGCAGGGAGACCCAGAGAGAAGGGAGTCTGATGGATTTTCCTACAGTTGCACTCTTTTCCAAGGAAaaggacaaaaagaaaaaacatgttttgttttatttatttcttttattttcaaccAAAGATACTGGTTCCATTTTAAAGATCACTGTGTATTATACCTCCAGGGTACTGCTGACTTTGCAGCTCGGTGtagctgtgtgtatgtgtgtgtatgtgtgtgtgattgtgtgtgtgctggttcGGGGTTGGGTTGGACATGTACAGGAGGGGCCTCCAGCTATGCCCACGGAGGGACACACAGTTTCTATCCTGCTATGCCCTGCCCTCCTGCCTCCATGCCCCCCAGCCACCCTGTCCAGTCTGCCCCATCTGAGCACCTCAGTTCCCTGCTTCAATATAGAGCTCAAGGGCTGAACAGTGGCTCGCACTTTATATCAATGACAGCAGCTCCACTGGCCTACACCCCTGTAGATCCTCTGTGTTGCCAGCAGGTGCCACCCTGTCTCCATGTTCAGTGCCAGCACTGGGCTCACTCAACCAGCTCTGCCAGACTGCCCACACTTCTCTTGAGGTACAGCCAGTCTGCAGGGTGAGAACAAGGAACCTGGCAGTGGAGCTGAGCCTCAGAGGGTTTCCCCCACCAGAGACAGGCCTTGCAGGGAGCAGctgtgcattgtgtttttgtgtttgtggagtGTCACGGCCACAACTGAAGCAGTTATCCGAGGGACGAGTCCGAGCGACTTCACTGTGAGAGGCAGGGGGTTTGTACTTTCCAGTGTGAACCAAGGTCAGCCCTGAGGCACAATGGGACTCTGTGccgtgtgagtgtctgtgtgttctcCCTGTTTACACCGACCCACCACAGCACGGAGCTCCGGCCGGccgcagtgggggg

Function

GO: NA

KEGG:

id description
K23286 NEBL1_2; neurobeachin-like protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002408 True 8477 mRNA 0.61 48 13271681 13304556

Neighbor

gene id symbol gene type direction distance location
AMCG00002402 NA coding upstream 34276 13228527 ~ 13237405 (+)
AMCG00002401 NA coding upstream 77605 13191029 ~ 13194076 (+)
AMCG00002400 NA coding upstream 130094 13140667 ~ 13141587 (+)
AMCG00002394 NA coding upstream 181298 13089416 ~ 13090383 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding upstream 186603 13071426 ~ 13085078 (+)
AMCG00002409 NA coding downstream 3441 13307997 ~ 13328399 (+)
AMCG00002406 NA coding downstream 64755 13369311 ~ 13373738 (+)
AMCG00002407 NA coding downstream 71024 13375580 ~ 13376288 (+)
AMCG00002412 NA coding downstream 84629 13389185 ~ 13406063 (+)
AMCG00002414 NA coding downstream 126280 13430836 ~ 13439194 (+)
G122914 NA non-coding upstream 81819 13189282 ~ 13189862 (+)
G122911 NA non-coding upstream 83403 13187949 ~ 13188278 (+)
G122876 NA non-coding upstream 204046 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 219291 13052025 ~ 13052390 (+)
G122830 NA non-coding upstream 860540 12404942 ~ 12411141 (+)
G122929 NA non-coding downstream 141 13304697 ~ 13305599 (+)
G123039 NA non-coding downstream 241508 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 261858 13566414 ~ 13570811 (+)
G123043 NA non-coding downstream 267963 13572519 ~ 13590681 (+)
G123169 NA non-coding downstream 1060480 14365036 ~ 14366335 (+)
AMCG00002393 NA other upstream 141984 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 200849 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 219710 13031759 ~ 13051971 (+)
G122746 NA other upstream 1131216 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1255597 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 1023076 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3653605 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3671732 16976288 ~ 16985906 (+)
G123807 NA other downstream 4610880 17915436 ~ 17984730 (+)
G123989 NA other downstream 5527458 18832014 ~ 18838531 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_06814184_06871990 NBEAL2 coding CI01000016 null 6814024 ~ 6871990 (-)