AMCG00002413


Basic Information

Item Value
gene id AMCG00002413
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13440937 ~ 13455498 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002413
GAGTCGGAGGAAAACAAGAAGAACCGGAGTTATCTTTCTGTCAGCAACAAGAACTGGACAGCATCGGCTGACATGACAAAGAAGAGGAAAAGGCAGGATGACTTCCAGAAGGTCAAGCTGAAGGTGGGGAAGAAGAAGCCGAAGCCGAACAATGCGACGGATGTCAACTTCAAGACGAGAGGCATCAGGCTCCCGGAGCAGCTGAAGAGCGACAAATCTGGGCCCACCACCCGCCGCCAGCTCAGCATCAAGGACCTTCTGTCCCAGCTGCACCACTACAGTAGCGGGGTGAAGCAGGAGGCCCTGGCCGGGCTGCGGGAGCTGCTGACCCAAAGCCCTGGGCTTCTGGACGCCCACCTGTCTAGTGTGCTGAGCGAAGTGGCTGCCGTCTTCACCGACAAAGAACCGGCGGTGCGGGCAGCCTCTGTGCGCCTGCTGGGCTTTGTGGCACAATGTGTGCCGGCGGAGCGCTTGGCGCCCTTCTTCCCTCTGCTCAGCGCCCACCTGTCCTGCGCCATGACACACATCGCCGAGGGCATCCAGCAGGACGCGCTGAAGATCCTGGATGTGCTGCTGGAGCACTACCCCTCCCTGCTGGCCCAGCGCTGCTCCGTGCTGCTCAAGAACTTCCTGGAGCTCATCTCCCAGCGCCGGCTGTGGCGGCCGGGTCAGCCCGGGAGCAGTGCTGCGGGTGGTGCCTGGGCGCTGGCTGTCAACCCTGGCAGGAAAGTCACGTCGCAGCAGTGGAGGCTCAGCGTGCTCAGCAGGCTGGGCCAGTTTCTGCAGGCTGTGGTGGAGGAGCGATCAGTGGAGGAGCAGGCTGGGCCGCTGGACGTCCTGGACACGGGTGCAAGGGAAGGCGGTGGCAGCGGAGGGAAGATGATCACCCCGCTGGAGCTCACGTGGGAGGAGCACAGCTTCGGCAGGGGAGGTGTGCAGGTGTATGAGAACTCCGGGGCCCACCCGACGATGAGGTCTGCGTTCCAACTCCGGCCAGATACAGAGCCTGGGGCTGGTGTGGAGGAGGGCCTGGATTCAGCAGAGATGGTGCAGGGCTTTGCATCCACGCTAGTCCCCCTGCTTCTGGAGGTGTGGGTGGAGGCATGCACGAGCGGGCAGGGCACCTCCGACAGCGGGCACCTGCTGCACCCCGAGGCCATGGCGCTCATGTACCAGGTCCTGAGCATCCTGCAGCTGCTGCGCCGGCTCAGTCCACACCGCCACCACCAAGACGAGCTGgACACCTGGTTTCGCAGCACTTACCTTGGTGACTTCAAACACCACTTCATGAAGAACTTCCCCTATAGCCAGCTGGAAGTGGCCAAGCACAAGAAGAAAGGGGACAGCAAGAGGAGTAAGCCGCCTGCAGCTGGGGGACCCAGTGTGGAGCCGCTGGCACTGAACCTGACCCTGTGCCAGGTGATGGTGACTCTGACCTCGGGGGCAGAGGGCCGTCAGGACGCAGAGTGGCTGGCCCCCATCAGGGCCTTTGTCAGGGACAGCCTGTCCAGTGGCACCAGGCTCAGCGCCAAGCAGCTCGGGGGTCTGCTGGAGGTGGTGTGGCGGCTTGTGATGACCCAGAAGAGCCGAGCGGTGAcggaggagctgctgcaggcgGTCAGTGTGCAGTACCAGCAGAGGAACCTGTCCCTGCCCGTGCGCGTGCTGCTCCTGCGCTTCTTCAGCCGCCTCTACCTGCAGGAGCACGAGGCCAACGCTCAGGTCACCAGGAGTAAGGTGCTGTCCCGCTGGCTGGCCGCTCTGCCCCTGCAGCTGGCTCAGCTGGGCTCCAAGAACCCCCAGCTTTCGGCCCGGCTGCTGCTCACAGTGCAGGCCGCCGCCGCCCGCCGTAACCGCGAGCTGCTGCTCAGCCTGCAGACACACGCCTGCCAACTGTACGACCCAGAGAAGGGCAGTGTGGTGCTGCTGCCCGCAGACTCCCAGCAGCGCTTGGTCCAGCTGGTGTACTTCCTGCCCAGCCTGCCTGCCGAGCTGCTGTCCTGCCTGAGCCGCTGCTGCACGGCGGGGAGAGTGTCCGCCAGCCTGGCCGCTTCGCTCATCCGCATCCTTCACATCAGgTCCCCCCTCAGCGGCTGGGCAGCCGGGGCTCCGGACTCGGCGCTCTCTGATGTGGATTACTTCAGCTTTCTCTTCTCCACTCTCACAGGTTTCCCCAGGGAGGAGCTGGCGGCTCTGCAGACAGGCAGTGAGGAGGAGCTGTGTGGGCCCTCGGCTCTGTGCCCCCTGAGCCTGTACCCCACCGAGCTGGACCACTTCATACATCATTGGGATGTTGTGGAGgaGGTGTGTCACTGCCTGGAGACCGTGGGGTCCAAGAGCCAGTGCTTTGACATCCTGCAGAACGCCATCTGTAAGAACCTGgcagggCTGCAGGTTCTCCCCGACAGCACTGCGGCCGCGGTGCTGCGCTGCGTGTCCCGGCTGCTGGACCTGTCCGTCCTGCCCAGCGAGGGGCTGCTGCGCTTCCTGTCCTCCTGCTGCCTCAGCCTCCTGACGCTGCTGCTTGTCCCCCGGCTGCTGCGGCTGGTGCTGCAGGGCCTGCGCGTACTGGAGCTCAGTGAAGAGGAGCTGCCCCTGGCCGCCCAGTTGCTCGCCCTGCTGCTGCAGCACAGCCAGCTGCGCAACCACATGCTGGCCAACAGTACCCTGCTGCAGCACATCATACAGGACCTCACGAGGCGCTGTCGGGGCGAGGCGCGGGAGCAGTGGCTGACCGACCTGCTGTACTGCTATAGCGTCACCATGTCCACGCAGCACCGAGGGGCAGTCGGCCTCCAGGACATGTACTGACCCCCCATCCCTACCTGACCCCCCACTAACGCAACGCACAGTTTACACTTGTATAAAAGACTGCGTCAGACACTCGGACTGCTCTGAAGACACACACTTCTTAGTGGATGGTAATTCATTTTCCTCTGTGCtttattccatttgttttcagttttttcatttATGATGGTGATGCATAGAAACTTTTCTTGTTTGGCAGGGATTGTACTGTATGAGTTAAGAATCCTGTCCTGtgatatttttcttattgaatTCCAAAATGTAAAGTGCTGATCAATTAAAGAACAGAGACTCTGATGTTCACAA

Function

GO:

id name namespace
GO:0071339 MLL1 complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14827 IPI1, TEX10; pre-rRNA-processing protein IPI1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002413 True 3117 mRNA 0.62 16 13440937 13455498

Neighbor

gene id symbol gene type direction distance location
AMCG00002414 NA coding upstream 1743 13430836 ~ 13439194 (+)
AMCG00002412 NA coding upstream 34874 13389185 ~ 13406063 (+)
AMCG00002407 NA coding upstream 64649 13375580 ~ 13376288 (+)
AMCG00002406 NA coding upstream 67199 13369311 ~ 13373738 (+)
AMCG00002409 NA coding upstream 112538 13307997 ~ 13328399 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding downstream 34680 13490178 ~ 13511283 (+)
AMCG00002422 NA coding downstream 199741 13655239 ~ 13656558 (+)
AMCG00002423 frrs1l coding downstream 235522 13691020 ~ 13696602 (+)
AMCG00002424 tmem245,LOC103353896 coding downstream 244752 13700250 ~ 13718461 (+)
AMCG00002429 ino80c,LOC107706244 coding downstream 411616 13867114 ~ 13877797 (+)
G122929 NA non-coding upstream 135338 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 251075 13189282 ~ 13189862 (+)
G122911 NA non-coding upstream 252659 13187949 ~ 13188278 (+)
G122876 NA non-coding upstream 373302 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 388547 13052025 ~ 13052390 (+)
G123039 NA non-coding downstream 90566 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 110916 13566414 ~ 13570811 (+)
G123043 NA non-coding downstream 117021 13572519 ~ 13590681 (+)
G123169 NA non-coding downstream 909538 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 913595 14369093 ~ 14369913 (+)
AMCG00002393 NA other upstream 311240 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 370105 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 388966 13031759 ~ 13051971 (+)
G122746 NA other upstream 1300472 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1424853 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 872134 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3502663 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3520790 16976288 ~ 16985906 (+)
G123807 NA other downstream 4459938 17915436 ~ 17984730 (+)
G123989 NA other downstream 5376516 18832014 ~ 18838531 (+)

Expression


Co-expression Network