AMCG00002414


Basic Information

Item Value
gene id AMCG00002414
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13430836 ~ 13439194 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002414
tacacattaacaTGCTTGAGAAAAACCCTATTAGAATGACTCAAATGTGGTTTTTGGTTAGATCGTACGGAGTGACGTCATTAGCAGTGGACGGAAGTTGAGTCTACGCCCCTCCAGACCCGACAGAGGTGTATTCGCCATCTTCTTCAGATCCACTCTTCTGTGACTctttgcagtgtttttacaATTTTAGgatggatgttgatatggatgatgctgctgctgccgccgccgccgccgacGCAGCTGCtgcaaccaccaccaccaccaccaccaccaccaccgctGCCACCGTCGTCGCTGCCATCGCTGCTGTTGATGATACTgcagctgctgttgttgctgctgctgtgcagGCAAATACCAAGAATGATAAATTGTCCTGTAGGATATGCCATGTCAGTTATAAGACGTCTCAGGCTTTACAAGAACACTTCAAGGGTCCGAAGCATTAcaaggtcagtgtgtgtgagagaacaGGGAAGCTGCttcagagagcacagagcattatttccctgtttattttatgaatttaatttttgtttcccCAGATACATTCCTACGCTTGACTTAAAGCGTAACACCTAGAGTGTTACACGCTAAATCAGCACAAACCCTAAGAGGTCTAGAGTGAAATAAACTGCTGGCTTCCTTCACCCGATAGACCCAATCAGCAGAGCTTTACTCAAGCCCCTGAGACCAGGAGAGTCTCCATCAGACCTGGGCTGTTCTGGCCCGACTCCCTCTCTCGGTCGTGGTGGTTTTTGCTCTGCCCACTGTGGAGAGCTGTGGGCAATATGATGTTCTCCTGTGGCTCCTCAGCCACAGGGGAACAATGTGGGAGAGAGTGGGAGTTGGGGTAGTGGTGGGTGGGAAATGTTGATGCACCTAATGCAGTTACGCAGGTGTCTGCCTttacaggacagtacaggtgccTTTGCAGGAGTCTTACCTGCTGCACAGAGGCCAGCTGGATATACTGATCTGAACCCCctagccagccagccagccagcatcTTGATGTTTATGTCATATGCTCATTTAATTTGCTAGTTGGCtcatgcctttatccaaggcgtATTTGTTTAAGTATTACAGGGGTTACTAGTCTGATATTGCAGTCCAGGTTGTTCTTCTGTAGTAGGAATGATCAGCCAACCCCAATACTGATACCTGGGGCACGCCACAGGGCACCTCACATCAGGATGAGGCTGCTTCTGCCTTTAAGTAATGCCTTGTTTTCTGTGCATTAACTGACTCTTTACCCACGTATATGAAGGTTCAGATTTAAAGCTTTGGATGTCTGACAGAACGTAATGTATTGTGGTTCAGATCCAGCACTAGTGGGTGTTGCTGCTTGCCTCTGGCACTCCCGGTGTTGCTAACAGTGCTGAGCCACGCTGGCAGGCTGTGGCAAGTTCCTGGTGAAGCAGGAAGCCACAGCTGGAGTTGAGATCAGAAATATGGATCTACAGGTATAACCCTGCTCCCTTAAACAACCGTGGAGACACCTTGCCTCCTCAATTCCACAGTTTCACTGGTCAGTCCTTATCTGTGCATATTGTCTTCCCAGGCACATACTGGTGACCTCATGCAGCATGTGTCTTGAATCCCTCTTCAGGACGTAATCTTTGCTGTGTTTTGAGTAGAGATCATCTTACTTACCCCCCTCACTGCAGAAGGAGGGTTGAAGGCCAATGCTGAATGCACCACTATGAGGCGTGCCTTCAGATGTTCGTGGAATCCCTCATGGTCGCCTCTCCAAGAGGAGACCCTGCAAGTCTCGCACTGTCTAACACAGATgttttgtctctttctcttccccGATGGTTTATAACACGTCCTTTGacagaaaaaacagcagctcAGAGAACCAGGATCCCGTGCTGCTCTCCACCAGCGCCTCTCGGCCTGAACTgacctgtctgtctctgctgcCTCTAGTATTTTCAGGTCCTGGGATTCACATGAAGTCCTTGGAGAAGGTGCTCAAAAGCTGCACTGAACCCATTGTCGGTCTGCAGTACGTGTGGGAGTTCCGCAGCCCCAGCCGGAGTGTCCCTCCACATTACCAGTGCAAGCTGTGCAAAGTGCAGCTGTTGCAGAATGAGATGGTCATGCACATCAAGGGCTGGAAACACTGCTACAGGTTGCTGAAAAAGATCTACCCTAAGCTGCTGACCGTGAAGGAGGAGGACGCCGTGAAGGACCCGGCCGTTCGCAAGGTGGTCAAAGACATTGCCGGCCAGGTGGAGAAGGCCTCAGGAAGGGGCAACATCCGGGTTTTGATGAAGGAACCTATTGATGTCCCATCTTTCCAGGGCATGGTTGTCGCAATGAAGCCCAAAATGTCCAGACAGGGTGCCCAGAACCAAGGGGGGAGATACCAGGGGGGCTACCCGAACCACATGTACCCCGCTGACCCGGGATTCCCAGAGTTTCCCATGGGGATGAGGAACGACGATATGTccatgaggatgaggatgaggaacGATGACCTGCCCATGCACATGCGCCCCGAGGACCTGTCCATGAGCCGCTACCCCGAAGACATGGCCAGGGGAATGTACGAGGACCTGGCCCCCCAACGGCCACTCAGCCCCGGCCACGGCCGCCGCTACCCTGACGCATACCCGGGCGGCCGGCGCTCCAatgagagggaggagaggggcaGGAGGGAGATGGTGGACTTCGATGGCAGGCCCTCCAACCCCAtgaggagGGACTATGACAGCTACAGGGTCAGAGGGCCAGAGGGCGGAGCCATGGACCTCTCTCAGAAAGATGGCCTGCTGCCCAGACCCCTGGAGAAGAGTGTCCCGGCCACACTGTTCGAGTGCCTGGGGTGTTTCTCAAGCCGTGGCTGTTGGTCTTGTTTCGCCCTGCAGGAGAACTTCCGCATTGAGAGCGAGTCGGACGCGCAGATCGTGCTGAAGGTGACGCAGAAGCTGACGGATGTGCTGATGGAGTACCGGCTCAGGACCATGTCCGGGATGAGTAACAGCAAGCTGACCTCCAGCCCTGACAAGTTCTCATCCTCCAGGTTGTCTGGGGGAGATAGATACCCAGGTAACGCCAGCACATACCTCAGCACAACACGAAACTGGGCCGGGGGTAGCGGTGTCTGTGTGGAGGGGGGAGAGATTCATCCAGATACTATGACTGAATGGCCTGCTGGTGCCCCACTCATGCCCAAGACTCGCTGGGACCAGAGGAACTACACCTGCACTGACACCGAGGGATGGGAGAGTGGAAGATGGAAGTTAATATCAAAGCAGTGGGCCCATCCTGCTTGAGTGTTGATTGGCTTGTTTAATCgtaatcatcattattttaaacttgtttaaatCTAAGTGAGAAGTGAGTTTCAGATGCTTACATACAGTGTGTGAAATTatcaatttctgttttattgtttttttaaaggtatctttttattttggtgaatTTTAGACCTTTGGAATCTGTTGATGTGTGCAAGAAGTTTGTAAGAATGTAGAACCCTGTCTAGAACGCTGCATGCTGGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002414 True 3530 mRNA 0.52 14 13430836 13439194

Neighbor

gene id symbol gene type direction distance location
AMCG00002412 NA coding upstream 24773 13389185 ~ 13406063 (+)
AMCG00002407 NA coding upstream 54548 13375580 ~ 13376288 (+)
AMCG00002406 NA coding upstream 57098 13369311 ~ 13373738 (+)
AMCG00002409 NA coding upstream 102437 13307997 ~ 13328399 (+)
AMCG00002408 NA coding upstream 126280 13271681 ~ 13304556 (+)
AMCG00002413 NA coding downstream 1743 13440937 ~ 13455498 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding downstream 50984 13490178 ~ 13511283 (+)
AMCG00002422 NA coding downstream 216045 13655239 ~ 13656558 (+)
AMCG00002423 frrs1l coding downstream 251826 13691020 ~ 13696602 (+)
AMCG00002424 tmem245,LOC103353896 coding downstream 261056 13700250 ~ 13718461 (+)
G122929 NA non-coding upstream 125237 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 240974 13189282 ~ 13189862 (+)
G122911 NA non-coding upstream 242558 13187949 ~ 13188278 (+)
G122876 NA non-coding upstream 363201 13067265 ~ 13067635 (+)
G122868 NA non-coding upstream 378446 13052025 ~ 13052390 (+)
G123039 NA non-coding downstream 106870 13546064 ~ 13546300 (+)
G123041 NA non-coding downstream 127220 13566414 ~ 13570811 (+)
G123043 NA non-coding downstream 133325 13572519 ~ 13590681 (+)
G123169 NA non-coding downstream 925842 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 929899 14369093 ~ 14369913 (+)
AMCG00002393 NA other upstream 301139 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 360004 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 378865 13031759 ~ 13051971 (+)
G122746 NA other upstream 1290371 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1414752 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 888438 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3518967 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3537094 16976288 ~ 16985906 (+)
G123807 NA other downstream 4476242 17915436 ~ 17984730 (+)
G123989 NA other downstream 5392820 18832014 ~ 18838531 (+)

Expression


Co-expression Network