Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00002422 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030136.1 |
| NCBI id | CM030136.1 |
| chromosome length | 27394605 |
| location | 13655239 ~ 13656558 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0009058 | biosynthetic process | biological_process |
| GO:0097502 | mannosylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0033164 | glycolipid 6-alpha-mannosyltransferase activity | molecular_function |
| GO:0004378 | GDP-Man | molecular_function |
| id | description |
|---|---|
| K03843 | ALG2; alpha-1,3/alpha-1,6-mannosyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00002422 | True | 1203 | mRNA | 0.64 | 2 | 13655239 | 13656558 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00002418 | erp44,LOC107593692,LOC107723539 | coding | upstream | 143956 | 13490178 ~ 13511283 (+) |
| AMCG00002413 | NA | coding | upstream | 199741 | 13440937 ~ 13455498 (+) |
| AMCG00002414 | NA | coding | upstream | 216045 | 13430836 ~ 13439194 (+) |
| AMCG00002412 | NA | coding | upstream | 249176 | 13389185 ~ 13406063 (+) |
| AMCG00002407 | NA | coding | upstream | 278951 | 13375580 ~ 13376288 (+) |
| AMCG00002423 | frrs1l | coding | downstream | 34462 | 13691020 ~ 13696602 (+) |
| AMCG00002424 | tmem245,LOC103353896 | coding | downstream | 43692 | 13700250 ~ 13718461 (+) |
| AMCG00002429 | ino80c,LOC107706244 | coding | downstream | 210556 | 13867114 ~ 13877797 (+) |
| AMCG00002440 | NA | coding | downstream | 742629 | 14399187 ~ 14459606 (+) |
| AMCG00002439 | NA | coding | downstream | 909841 | 14566399 ~ 14576984 (+) |
| G123043 | NA | non-coding | upstream | 64558 | 13572519 ~ 13590681 (+) |
| G123041 | NA | non-coding | upstream | 84428 | 13566414 ~ 13570811 (+) |
| G123039 | NA | non-coding | upstream | 108939 | 13546064 ~ 13546300 (+) |
| G122929 | NA | non-coding | upstream | 349640 | 13304697 ~ 13305599 (+) |
| G122914 | NA | non-coding | upstream | 465377 | 13189282 ~ 13189862 (+) |
| G123169 | NA | non-coding | downstream | 708478 | 14365036 ~ 14366335 (+) |
| G123171 | NA | non-coding | downstream | 712535 | 14369093 ~ 14369913 (+) |
| G123197 | NA | non-coding | downstream | 1035423 | 14691981 ~ 14692776 (+) |
| G123295 | NA | non-coding | downstream | 1606391 | 15262949 ~ 15340169 (+) |
| G123386 | NA | non-coding | downstream | 2033043 | 15689601 ~ 15689963 (+) |
| AMCG00002393 | NA | other | upstream | 525542 | 13125378 ~ 13129697 (+) |
| AMCG00002388 | NA | other | upstream | 584407 | 13044693 ~ 13070832 (+) |
| AMCG00002390 | NA | other | upstream | 603268 | 13031759 ~ 13051971 (+) |
| G122746 | NA | other | upstream | 1514774 | 12133786 ~ 12140465 (+) |
| AMCG00002360 | NA | other | upstream | 1639155 | 12011971 ~ 12016084 (+) |
| AMCG00002437 | pcbp3,LOC108266078,LOC107657516,LOC107728912 | other | downstream | 671074 | 14327632 ~ 14361536 (+) |
| AMCG00002500 | snrpd1,LOC105910057,LOC107655105,LOC107559756 | other | downstream | 3301603 | 16958161 ~ 16960082 (+) |
| AMCG00002496 | NA | other | downstream | 3319730 | 16976288 ~ 16985906 (+) |
| G123807 | NA | other | downstream | 4258878 | 17915436 ~ 17984730 (+) |
| G123989 | NA | other | downstream | 5175456 | 18832014 ~ 18838531 (+) |
