AMCG00002429 (ino80c,LOC107706244)


Basic Information

Item Value
gene id AMCG00002429
gene name ino80c,LOC107706244
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13867114 ~ 13877797 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002429
ATGGAGGAAATACCAGCCGCGCCGCTGCCTGCAGAGACGGTCCCCTGTCCTTCCCCCAGTGCAGGCGCTCAGCTGCCGGCTCCGGCGTCTCAGGCTCGGGGTAAGAAGCGGCCGGCCAGCCCTGCCTCCAGCGCCGGCGCGACCCCGGCCAACAACAGCAAGAAGAAGAAGCTGAATTTTCCCGGCGCCGCCGCACAACCTCAGGCACAGatgGCTACAGTGGATTCGGTAGGAGAGAGTAAGTCTATGACCGCTGACCCCAGCACTGTGACCCCTGAGACTACAGTCAAGCCCATGCCATTTAAGGACCCTAACTTTGTGCACTCTGGCATCGGAGGTGCAGCCGCCGGGAAGAAGAACAGGACCTGGAAGAACCTGAAGCAGATCCTGGCCGCTGAGAGGGTGTTGCCCTGGCAGTTGAGCGAAGCCAGCTACTGTAACATAGATGCCCCCCCTTCCTTCAAGCCTGCAAAGAAGTACTCGGATATCTCTGGGCTGCCGGCGAATTACACCGACCCACAGACCAAGCTGAGGTTTAGCTCCACGGACGAGTTCTCCTACATCCGTATGCTGCCCACGGATGCCGTGACGGGGTACCTGGCTCTGCGGAAGGCCAGCTGCATCGTGCCCTGAGCAGGAGCGGGACAGCGGAGGGTCGGCCCAGCACCGAGCGTCAGGCCAGGAAGACTGCAAATGCTCAGCTCTGGAAATTTGCAAgaatactgtaacattttacatgcaTACAGATTTACAAAAGAACTAAATTAATTTCCGATTGTGGGAATTATAAGTAGTCCAGGATGTATTCCCATGGGCCCTCTGTCGCTTAAAATTGCacaccagccagagagagagagagagagagagagagagagagagagaaaaggaggtcGGGACACTCGGTACAGACCTCGAGCCCCGATGCCTCCTGCCGTTCCTGAACTGTACTGTGCCGTACAGACTACACACTGAACCGAGACCAGCCAGTGCACTCGACACTCGAGGCTGGAACAGTCTTTTTAAAAAGGCGTGCTAAATCTGGAAGAACATGTGCAGGCCCTGTTGAAGAGGTCTTTCTGGTCTGTAAACTAATCTCCAGCTTCCACAGAGAAAGCTTCCCaacattcttccaaaagattcATTTAAAACTACTGCTGTATTTTGTTACGTAGAATTTAGTGAATTTCTGTTACTGAAATAGATGCTTTCAGGGAAGTGAGAAGTGGAAGTGAATTAtagaattataatataaaaaggagACATAAGGAAGCATGCTGTTTCAGTATATTGAAGGATATCTGATGCAGATGCACAGGAGTGAATTTCTTGAATTATGAACTCGTCTTTGGATGGTGCCCgttttataaatgcattctCAGAGATGttgcttattaatttatttgttgtgaGTAGAGGGACGGCAGGTTTTCACTAAACGTTATGTGCCGAGACTTCAGAGAAGCTCTCCTCTCCCCAGCATGTTTGCACAGTGTAAGCCTGGTGCTCCTGTGAGTTTCTCATAGCTGTGTTTTTGCACCCCTAGACCAGACGGCCCTTTTGACTGGACAAATTGTGCCTTGTTCGTATACTCTCCCCTGGTCGCACATTTAAATGAACATGGAAAGCAAACATTGCAGCAGCTCAGAAGCTTCTGACCCAGGTCTGTTTGAAGTAGGAGCAGCAGAGAACGTGCTGCCAAAGTCCAGTTTTGAACCGGCAGGAATCGACAGCGCAGTGCGCCACGTGCACTCCTGTTCAGAACACGAGGTACAACGCGCACGGCAGCGATTAGCTTGAAGTTTGGCTTTCgggttttaattaattctcGCTCCTGCTCGAACTTTAGATCTTAATTGCAGCTCTGGTGTGCGACGATTTAGCAGGCAGTGACGCTTGAGTGAACGGTGCTTATAATGAAGTGTAACCTGGGTAAAGGTGGGGAGACGTGCACTGCAGAACAGCTTATCTTGGGGTGCCAGCTGGACTGTGATGTGCCAAGCTTTGATTGACATTTCAACATGTGTAACGGCCGGGTACCTGAAATGAGGGACGCAAATCGGCATGCCATATGTGCAAGTGACGCGTTTCTTAGTAAcctaataatatatttcttttgTAACGAGGAGAGCTTCAAAATATTCAGGATTATAATGGTATGGTGTTGGTTCTTTGTGCCAcacataaatgtattatgtgaTGTTTCAGACCCTTAATCATACAATTTGCAGAAGGCAAAAGGAAACTGTGTGGGTGGTAGAAAACCGTCAGCTTTTGAAAAGAGGAAAGATAATTTCTTCTTACtgtttgtattctatttttCCTACCATGTGTaggaactgatttttttttttttgcttcaaaactgaaatgcagtattttaaacTTGTGACAATTAAAAATCTCTGTTTAGACACGTTTTCTGTATGGGATTTGGAGGGTTAGGAGTGG

Function

symbol description
ino80c Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80C (INO80 complex subunit C).

NR:

description
PREDICTED: INO80 complex subunit C-like

GO: NA

KEGG:

id description
K11667 INO80C, IES6; INO80 complex subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002429 True 2448 mRNA 0.48 5 13867114 13877797

Neighbor

gene id symbol gene type direction distance location
AMCG00002424 tmem245,LOC103353896 coding upstream 148653 13700250 ~ 13718461 (+)
AMCG00002423 frrs1l coding upstream 170512 13691020 ~ 13696602 (+)
AMCG00002422 NA coding upstream 210556 13655239 ~ 13656558 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding upstream 355831 13490178 ~ 13511283 (+)
AMCG00002413 NA coding upstream 411616 13440937 ~ 13455498 (+)
AMCG00002440 NA coding downstream 521390 14399187 ~ 14459606 (+)
AMCG00002439 NA coding downstream 688602 14566399 ~ 14576984 (+)
AMCG00002442 NA coding downstream 727867 14605664 ~ 14614093 (+)
AMCG00002444 NA coding downstream 761079 14638876 ~ 14641950 (+)
AMCG00002441 ikzf1 coding downstream 778056 14655853 ~ 14666224 (+)
G123043 NA non-coding upstream 276433 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 296303 13566414 ~ 13570811 (+)
G123039 NA non-coding upstream 320814 13546064 ~ 13546300 (+)
G122929 NA non-coding upstream 561515 13304697 ~ 13305599 (+)
G122914 NA non-coding upstream 677252 13189282 ~ 13189862 (+)
G123169 NA non-coding downstream 487239 14365036 ~ 14366335 (+)
G123171 NA non-coding downstream 491296 14369093 ~ 14369913 (+)
G123197 NA non-coding downstream 814184 14691981 ~ 14692776 (+)
G123295 NA non-coding downstream 1385152 15262949 ~ 15340169 (+)
G123386 NA non-coding downstream 1811804 15689601 ~ 15689963 (+)
AMCG00002393 NA other upstream 737417 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 796282 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 815143 13031759 ~ 13051971 (+)
G122746 NA other upstream 1726649 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 1851030 12011971 ~ 12016084 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 449835 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 3080364 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 3098491 16976288 ~ 16985906 (+)
G123807 NA other downstream 4037639 17915436 ~ 17984730 (+)
G123989 NA other downstream 4954217 18832014 ~ 18838531 (+)

Expression


Co-expression Network