AMCG00002434


Basic Information

Item Value
gene id AMCG00002434
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13990906 ~ 14043904 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002434
ATGCCCACTCGGAGTGAAGCTGAAGGCACAGTGATGTCCGTCTCTGTCCTCAAGCTCTGGGTCCAGGTGAGCTCACAAATCCCCACCTGTGATGAGTTGAGGCTGTCGGTTCCCAGGGTGAGCTCCTGTGCCAGAGCAGGCCTCTCAGAGCGAGGGGCTCAGCCGGCGTGCGGTTCCTGTGCTGAAGGGCAGTGCAGGCAGCGTGGCTACCCGACCATAGTGATGACCTCCAGGCTGCGTGTGTTGGGCGGCAGGATCAGCAACATACGGGTATCGGAGCTGCCAAAGGACAAGAGCAGGTCGGAGGTCGTCTGTAATGTGCTGTTCCTGGATGGCTCCGTCCAGAGTTTCAAAATCAGTAAACAAGATGCCGGTCAAATTCTGCTGGATATGGCCTACAACCACCTGGGTCTGACTGAGAAGgagtatttcagcctccagcaCAACGAGGACTCCATAGACTCGCCGAGGTGGCTCGAGCCCAACAAAGCTGTCCGGAAGCAGCTGAAAGGGAGCTTCCCTTGTTCCTTGAATTTCCGGGTGAGGTTTTTCATCCCCGACCCCAATTCATTGTTGCACGAGCAGACCAGgcatttgtattttttacagctCAAGAACGATATCCAGGAAGGAAGGTTAAATTGCCCTCTCAGTTCTGCGGTGGTCCTAGCCTCCTATGCCGTACAGTCTGAAATTGGAGACCACTCGTCCTCTGAGCATCAGCCCGGATACCTGTCTGAATTCCACTTCCTCCCAGAACAGGACGAGGACTTCCTAACCAAAGTAGAGTCCCTGCACGAGCAGCACAGAGGCCTTAAACAGTCCGAAGCCGAGCTTTGCTATCTAAACATCGCCAGGACCCTGGAGTTCTACGGCGTCGAATTGCACAGCGCTAGGGATCCGAACAATACAGAGCTGCTCATAGGAATAGCCTCCGGGGGGCTTGCTGTTTTTCGCAACATGATTTGCACAAGTTTCTTCTCCTGGGTCAACATTATCAAGATTTCCTTCAAGAGGAAAAGGTTCTTTGTACAGTTAAGGCAGAAGCACGGTGAATCTCGAGACTACACAGTGGCCTTCAGCATGCTCAACTACAGAGCATGCAAAAACCTGTGGAAATCCTGCGTGGAGCATCACACCTTCTTTCAGAGCAAGAAGTCACTACCTCAGGACAAAAAGCTGCTGTCCAACTACTGGACCTTGGGCTCCAGAACCCCTGCcaaATCCTTCAACAATCAATTCTGTCGGAAAGTTATCGGAGGCATGGTGTGGAACCCAGTGCTGAGGAAATCGTTGTCCGTGGAGCACCTGGAGACTAAGAGTCTTCCCTCACGCTCCCCGCCAGTCACGCCAAACTGGAGGAGCCCTCGGCTGCGGCACGAGATAAGGAAGCCGCGACACTCCTCCATGGACAACCTGGCCAGCGAGATGAGCTACATCACCGAGACCGAGGACGTCTTCTACACATACAGGACGACCCTCAGCAGCAAGGACAGCGACCCAGAGACGCCCTCCAACCACAGCCCCTGCAGGAAgTCGTCTGAATCAGAATTGCCAAAgaAACTCCTAGAAAACACTGAAGCACAGCCCACTTCGCCCACACCGTCGCAGAACCATTCTCTCACATCCTCCCCCAGTGGCGAGGAGACCCAGGTCAGAAGTCCACCGCAGCGGTCAGGGTCTCACCCTCTGGAGGGACTGGACTCCCAGTTCCTGGAGAGCTACAATAGCGTGACACAAAGCGGCACCACCGATCCGGACTCGCAGTACTACCTGGACAAGAACGAGGTGTTGGATGGGGACCTGCTGCTGGTGCGAATTACCCCTGATGAAGAGGGAAAGTTTGGATTCAACGTCAAGGGAGGGGTGGACCAGAAGATGCCCCTTGTGGTGTCCCGAGTGAGTCCCGATTCTCCAGCTGGGAAGAGCATCCCCAACCTGCTGGAAGGGGATCAGATAGTGCTGATCAATGGAAGAGACATTTCAGAGCACACCCATGACCAGGTGGTGATGTTCATTAAGGCCAGCCGGGAGTCCCACACCAAAGAGCTCGCTCTGCTGGTCAGGCGCAAAGTGGCCATTCTTCACGTGCTACCGGGGCCAGAGGACGAGATGGACTCCTCCATGCTGGGAGACTCAATCCTGCCGCCCTGTCAGCAGTACGGGGAGACCCTTGAAGAGTCCATGGAGCAGCTAAAGAGGGGTCTGCAAAGTGGCACGCTGCTCATTCAGTTTGAGCAACTCTACAGAAAGAAGCCCGGGATGGCCGTGTCATGTGCAAAGTTACCTCAGAACATGGAGAAGAACAGATACAAGGATGTGTTGCCATATGATGTGACCAGGGTGGTTTtggagggagaggaagatgATTATCTCAATGCCAATCACGTGAACATGGAGATCCCCTCGGCCGGCATCGTGAACAAGTACGTGGCCAGCCAGGGCCCCCTGCCGCACACCTGCACACACTTCTGGCAGGCGGTGTGGGAGCAGAACTCCGCCCTCATCGTCATGCTCACCACCCTGACCGAGCGCGGACGGACGAAGTGTCACCAGTACTGGCCAGACCCACCAGAGGTCCACGAGTATGGCCGGCTGCGGACAGGGGAGGAGCGCAGCGTTACACACCTGCAGTACGTGGCCTGGCCTGACCACGGCGTCCCTGACGACCCCTCTGACTTCCTGGACTTTGTGAACTTCGTCCGGCAGAAGAGGGACAAGAGTAACCCACTGTTTGTCCACTGCAGCGCTGGGATTGGTCGAACCGGTGTCCTTGTTACTATGGAGACGTCCATGGAGCTGATTGAGAAGAACCAGCCCGTGTACCCGCTGGACATCGTGAGGACCATGAGGGACCAGCGATCCATGATGGTGCAGACTGCGAGTCAGTACCGCTTCGTGTGCGAGGCCATCCTGAGGGTGTACGAGGAGCGGCAGGGGGGCGGCACACTGGACTGCAGCTAGCTGGGACCCCGAAGAGGAGTGGGAGAGCAGTGGGTGGCGGGGTTCGGCTGCCCCCCGAAACACACGCATGTGACCTGCAGGCAGATGGCTCTCCCATCTAGaaatctagagagagagagagagagagagaaatacggTGACTGAGGCAGAGCACATTAGAACTGTGgcactttaaaaacatgttgggagtactgctactactactactactactgctactactactactactattactactactactgctactactactaggatatataaacatatatgacTTTTATAGCACTATTTGTAAATGTccgtttatttgttttgttttttgttttttgtttttgttttcttgattggggggaaaaatacttttgtacgacacaaagcaaaagaacaaaaacaaatctgaaaacatgttCCCAGTAGCTCTTAGCTGCTCCCAGGATCTGGTGTCTGACTATCTGGATGGGTCGATAGAAAGGACAGCATTGATTATTGAAACAGAATCACCTTAAataatctgttttcatttgatattGTGTAAATATCAGACTGATGCAGCTGTAGTGAAAGACAGACTGGTGCCAACTACTGCTTCAGCCTGGGACAGTTTGAAGGTCTTTACACAATATACGCCCAGTTTGATTCGGACAGGCTGACTTCAGTTTTGTAGAATTTCTTTCTTATCCAATGGGGGACAGCATCCTGACAGAGCTTCTTAGCAAGATGACGATGATTTTGTACTTATTGCTGAAGATACAGTGCTGCTATGTATAAACCCATAGTTCCTATGCTTATTTTCCTAAGCGGATGCATGTTTACTGTTCGGAGTTCAATACCAGGGGCGGTGCCGAGATGGTTTGGCGGAAGGTGCGGCCCGACTCCTTCATTGTCGAGGGAGATTGAGGCTGCTGTTCCCCCCCCAGCTGGGACAGGGCCTTGATTGTGCGCTGCCAGTGTCGAGGTTTCCACAGACACCCAGTGGAGCAATATAGAGCGGGAGATTCGGAAATCAGATTGACTCTTGGGCGATGCACTTTTACCCAGTAACTGTATCAGCCTCTCTACTGGCCAAACAATGTATCCAACTTACTAATggtgacatttatatttatgtataaaggaaatgtgtgtgtgtgtgtgtgtatgtatatatacttacacacacatacatacaggaCACAGCATGACAACAGACTTAGTTGTTATTGTTCTGGGACAAGATGTTTGATACGTAAATTTCGGAATATTAGATTGCACTTTAGATGCAGTGAGTAGCTTTTTACAGCCATCTTATTATAACCAGTGGCAGGAGAGCGATTACAGGGTATTGCGCTGGAGATGGTAGTCCACCTTTTTTTCATGTACAAACTCAACGTGGTTGTCCGTAACATGTAGTGCATACCAAGTCAAGGTCAAAGGTCGTGTGCCTGTAAGCGATACAAGGCCTGTAGGATCACGATACTTGTGTCGGACCATGTGATGTACgttttcagaaacaaattgAACCGCATAAGTAGTTTGTCGTAGATGTTGGTAGAGTTGATGCAATAAACAGCGTTTTCCAGTCACATTTCCTAAGAATTAATACTGGGAAATGTTTCTCCAGCTGGGAACCAGTGCATTCTGTTGTTAATTCCAGTTTGTTTCCAACACTGCTTATTGTGACACAAAGTGTGTGCTCGGCCtctttgtaatttgtactaaGAATGTGTAGTTTTAGAAGGCACTAATATCTCCAAAAGATTTCTGTAACGGGATGTAGAAGGCATAGTTGACACGCATTATCTTTATCATTctattagtttatttgtttgtttttccaaaagtACATGGTGTCTTATGACCGTTCACAAGATGCTGTTGTGCAGCATGGTGTTCGATTAAATACTATAAACAATGGATTGCAGAACAGTAGATTTCTCCCTATTGAATATGTAGTTTCTGTGtatgaattataaatgtaaatagagATATAGAAAGGGAAATGATTCTTAAGTTTGTGCCAAGGAATCCTGCTTGTTCACCTCTTCtggctttattttctttccttgatCAGTTTGTCCTCGGAAAGTGTGTGGGGAAGGACGTGCTGccgagagtgtgtgtgtgagtgtgtgtgtgtttgtgtgtgtgcttgcatCTGTATATGTTAGTGCGTGTGCTATTACAGAGACGGTGGGTCTCCCCTTGAGCTGTGTGTTGAAGATGGTATGAAGGACGCAGAGTCTTGACCGTCTAGAAGCCAGCTGGTAAGGTTGTTTTGCTGTGCTCAGTAGGTATGCCGGTGCTGTCAGTATCTGTGGCTGTAGAGCAGCAGTCGGGGCTAAAGACAAAAAATCACTCTGGAGCCGCACAACATCTTCACAACGTGCCTCCTGAAAGATCAGAGCAGAGATTAGATCAGCTTGGCAGAGAAACCAAGGTGCCCCCAGTGGAATCcttttcatgtgtttaaaaGCATACATATAACCTCTGACCgaacaataacataataataatgattattattataataacaataataaccataatTGACATGGTCTCTCCTGCCTATTTACAGTCTCAACCTtgaaagggaaaagaaaggaaatgttgCGGTGATGCAGGAAGGCAGGGGCAGGGACTGTTTGATGGTGCTGTGTGAACGCGGTGGTCGTTCACAGGACTGAGCACACAGGTGAGCCTGCAGAGCTGTCACCATGGTAATAGAGCTGCGCAGTGAGCAGCTTGACAGCTGTGATTTTTACGACCAGGACTTCTCGcagtgtgtttatttctcttGTATTTCCGTGCAGCCGCTAGTGAGAACCGCGTCGTCCGCAGCGTCTCTGCAGTCACCTGTCTGTGCCGTTTCCTCGAGGCAGGGGACCAGTGTGAGCAAGAGCTCCAATTAAAACGtacatgaatgcatttaaaacaagtaGGTCTCAGAAACGGCATTTTACAGTGCTGCGGTTTGGGTTGATTATGCACATTATGATTATGTGCTCTGATCTGCTTTTCTCACTAGTTTGTTTGACACATAAGGTTGTTTCTCTCAGTTTGCCACTACAAAGCCTAGAAATGACCATGTGACAAGTCTTTGTTACATGTTTTCTCCAGGTCATCAGCCATAAGTGACTGCACAGGCTTTCCTATGGTTTATATCAAAGGGGATTTACTGATTTCATGTAATCTTCTCATTCTTCAGACTCTCTCAAGTCTCAGCCTGTCCAAAGTTGAGTTTGGCTTTGGCTTTGGCTTTGAATGAAACTATCACACTGAGAGTGCCTGAgcacaattcatttaaattatttatcttAATTACACCCTGCAGTGAGCTTTGTgattgatattgtttttttgctcATTATCACTGATGAGGGGTGTTTTTCTCTAATGAATATTTTGGTTCTGGACTGTCCTGGTTCACGTGCAGTTGCTCTCTCATGACACAGAGAAAAGCCAGTACtataataatgcataaataataattctcaTGCATATTTTCATCTGCCTGTGTTCTGAACAACTAATGTTCTCAACCCTTGGCAGCATTGAACAGGgtttcacaaaaaaacaaatcatcattttgtttccttctccctttatttttttatttttttaaggttgtGTTCTCAAGGGCTATTTGTAATTCACTCAGTGTCACAGTTGCATATTTGCCAATGGAAACGTATCAGTGCTCGATCCTAGTTTATTTTTGCACATCTGGCCTAATACGATGACAACAAAATCGTAGCCGAAATGTTTGCTAAATACTGCTGTATGTTTCTGTACATATTAACCCAACATATAGGGTTGAGTAGTGCtgccaaatgtgtttttttctttccctaaTGTGTTGtagagatgcattttttttaattgactgagACTCATTGACTAAAATTAAGCAATAAGATAAGCACTGATGTTAttatgcaacttttttttttatgacactCGTCCAAACTATGCAATGGCGCTTTACTTTGTACCGACTCTTCGTCTTCAAACAAACAATCCCACAAATATCTCGATGAGTCCGTTTCTTTACCCCTGCCATCGCTACAAATCACTCTCTTTCGCCCGGATACGTTTGCACGGATGTTGGCTGCCAACCAACACTGGGACTCAAAGTGTTTCTGACTGTCAGTGAACGTTTGCGATTAAATAACACTCACTGGCAACTTCAAACGGTCTTCCCAAAGACAGTTTGTTGCCCGGCACCAATTGTCTAATATTTTGCAAGGATGGAAATATTCAAAATAGCCACTGTATATTGCTCATAATTAAGAATTATATGTATATCCATCCCAGGTGCACTGCAGATGTTCCATGCATGTTCTCCAAAAAGTGATGTATCTGGTGTGAGTCAATAAATCCCCATGTCCAAGTCATGTGTTGATGCATAGGAAAGCACACCTTAAGACAGAGCTGCTGAAAATCAATCTCCTGTGCAATTTATTCAACTCAGCGTCTTCCCCAGTTTCCACATAGGTAACTGGAAGTGAACTGGGTCAGGCCGATGTATtgctgtgtggatgtgtgtcCATTGGGATGTGTATTTCGGTagagacacactgactcacGAGTCTGCATCTGTGCTGCGAAAAGGCTTTTACTTcgttgaaaaatatatttgaaaagagTTTTAATCAAGGTCCCCTTTTGGAAAGTGTATAAAACAGTGGCTTTGTCTCGGATTGCTCTTTTCAGCACTTAGCTTCTCAACAGCCCCTTCCTGTGTCCAGTCTCCCACTTGTACCACTATGAAGGGAAAATACGATTAATGCAAAGAGCTGTGTCTTCCCTTTACTGTGTCCTAGACCTCTAtctatttccatttccatttcggacacagtctctctctcacatgcaGATAATTGCCAGGTGTCACTTTCATTTCGGTGTGGCAACTGCAGTGAACAAACTGACAAGCAGAGATCTCAAACGCAGGAATGCCTTTGAACTCTCACTGTTTCCAAACGAGTTGTGCTGTGAATTCGTTTGCGTTAAAATCCCACCGTCACAGAGATGCTGTCGATATGCCTTCCGGTGAATCTACTGCTGTTTGTGCTCACTCTCAATTGTGCCATCACCCCAGCATCGTGGCTGTTGTAGACTGGAGACGGTAGCTGGGTGATGCTCAGAGTTTGACTTCCGCTGTAAAGTGTTAATGATTTCATGATTAATACCAAGCTGGCACATGGGGAGCATTACCGTCTATTGATTTTTGTACACTAACAAGTTAATAacctgtttaaaatgattatgcGCCTGTAAATTGATGTTAATATtataaagtttaaattattctttaacattgttatacttttttttcttcctgaatgaatgtaataaacatttttgtaggtttatataatttgtttaaaactgataaaaagtaacaatgttgacatttataatacactttttttgtCGTGGGTTTTGGAGCCGTTCTGTACATGTCTCGGGCTTGGCCTGCTGAAGCTCTTCTGTTTCTACAGAAAAATGAGTTGATGAAATCCTGTTTGCTTACgtgaatacatttattaatgacttaaatgaataaataaacaaatataaagcaCAGCTGTTTACATCTCATCAGACATTCTTGGTTCTAATCTATGGAGAATTCGGAATGGATGAAACATATTCACCTGTcagaaattgtataaaataagcttttcctcttttgtaaaatacattcgTGTCATAACAAGC

Function

GO: NA

KEGG:

id description
K18027 PTPN3, PTPH1; tyrosine-protein phosphatase non-receptor type 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002434 True 8673 mRNA 0.46 28 13990906 14043904

Neighbor

gene id symbol gene type direction distance location
AMCG00002433 NA coding downstream 24439 13966110 ~ 13966467 (-)
AMCG00002432 NA coding downstream 51645 13885177 ~ 13939261 (-)
AMCG00002430 galnt1,LOC107593713 coding downstream 197716 13788543 ~ 13793190 (-)
AMCG00002431 NA coding downstream 218597 13768415 ~ 13772309 (-)
AMCG00002427 galnt1 coding downstream 231987 13756885 ~ 13758919 (-)
AMCG00002436 NA coding upstream 26881 14070785 ~ 14101399 (-)
AMCG00002435 NA coding upstream 83900 14127804 ~ 14151845 (-)
AMCG00002438 NA coding upstream 321151 14365055 ~ 14369820 (-)
AMCG00002445 fignl1 coding upstream 636480 14680384 ~ 14682429 (-)
AMCG00002448 NA coding upstream 652494 14696398 ~ 14731127 (-)
G123027 NA non-coding downstream 499289 13487114 ~ 13491617 (-)
G123014 NA non-coding downstream 533847 13455085 ~ 13457059 (-)
G122991 NA non-coding downstream 578610 13411499 ~ 13412296 (-)
G122957 NA non-coding downstream 685311 13303152 ~ 13305595 (-)
G122956 NA non-coding downstream 687824 13302120 ~ 13303082 (-)
G123152 NA non-coding upstream 34340 14078244 ~ 14111201 (-)
G123175 NA non-coding upstream 498917 14542821 ~ 14543020 (-)
G123177 NA non-coding upstream 522343 14566247 ~ 14567067 (-)
G123178 NA non-coding upstream 543310 14587214 ~ 14588758 (-)
G123179 NA non-coding upstream 544905 14588809 ~ 14594542 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 336659 13649227 ~ 13654247 (-)
G122862 NA other downstream 961500 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1984554 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 2118044 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 2136015 11848470 ~ 11854891 (-)
G123263 NA other upstream 897356 14941260 ~ 14946311 (-)
G123585 NA other upstream 2792252 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2914258 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 3646104 17690008 ~ 17706289 (-)
G123829 NA other upstream 3878548 17922452 ~ 17989465 (-)

Expression


Co-expression Network