AMCG00002440


Basic Information

Item Value
gene id AMCG00002440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14399187 ~ 14459606 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002440
ATGGAACGACTTGTCAGCGATCTTAGTAACCTCACCAAGACCAGATGTGCATGCCAGCTGTCCCCTGAAAAAATAGAACAGTATTTACACAGGTTCAATGTGTACCTGGAAGAATATTTTGCTGAAAGTACCTTTGTGCAGTTACTAAACATGATACAAAACCTGAGTGACAGGAACATCTCAAACACTGTTCAAGAATTCTGCACGTTGTCTTCAAAGGACCTCTATTCTCTCTTTGTAACAGTCAGTCAGTACTTTGACATTAGAAGCATCATCTATAAGGGCTTTATTCCAGTAGTCATGCCAGTTAAAATCAATCAGATCATGAGCCATGTGCTGGACATGTTCTCTAGCATTGCTGTCCTGACCAGTAAAGCTCGTCCAATCATCCGCCGCCTGCCGGAGCTGCTGGGGTCCTTGTCAAATCTGGAATTGCCTGGCGTACTACAGTTCCAAGAGGCATTGGCAGGCACCGCGTTAAGGGTGTCGTCTGCTAGCTCTTGGCACAGAATGTCCAAGATGGTTTGCAAGCAAGAAGTACCTGCCATGTTAGCAGAGAGCATAATGTTGTCTGAGTTGCCCCAAGTCACCAAACTCACCACGGAGGACATTCAGAAGTACGGCATACCCTCAAATTCCACTGACTTTTGCATGGAGTTTTATCAGGACATTCTGCAGTCTCCCAGTGGAGCTCTCCTATGGACCTTCCTCAAGCCTTTACTACAGGGTAAAATCCTCTACTTCCCACAGACAGCGGCCACACAGGAAGTGCTGGGAAAGGCTAATGCTACATTTGAATATGTCAAAAAACTCAAAACCTACGCAGAAGCATGGCTCAGAGCATCAGATATGCTGGGGAAGAAAGAGAGCATCCTCATGATCAATCAGCTACAGAGCTTCATTGAAAGTCAGTTAAATATTGATTTGGATATGCTGTCTGCAGAGCTTCAAGCATATGGGAATGCTATAAACAAGACTTTGAGTGATCCAGCGACAGAACAGATTAACTTGCTATCTCAACTCATGGTGAATATCTCAGCTTGCGTATCTCTGGACCGCTTTTCTGGGTTTGACTCACTGGcggaaatggaaagaaaggcCCAAGAGCTAATGCAACAAAACAACTTCCTGGCAAGTGTGATTTTCAACTTGAGTGGCAGCCAGGAATCTCCCAGTCCTCCTCCAGGTTCGCTTCCGCCCCATCTGAGCTACACCATCAGAACCAGTGTCCTCCACAGCATGAGGACGGACCAGCTGCAGAACCCAGTGTGGGCGGTTCATCCCAAGAGCGTCCCCATGGCCAGCTTCCGATACAACCGGGTCTTTGTTCCCCTGCAGGACATGATCGAGCGAGCAATCATTGCTGTCCAGACGGGGAGGGATGTTTCAGACACCCAGTCGATTGTCCAGGCCATGCCTTACCCCTGTCACATCCAAGACCAGTTCATGAGCAGTGTTGGGTTTTTCCTCCCATTACTGATGATGCTGTCCTGGATGATCTCATTGGCCAGTATGGTCCGAAAGCTTGTCTTTGAGAGAGAAATGCAGCTGGAAGTGTACTTGGAGATGATGGGAGTCCAGCCAGCCACCCATATTGCTGCCTGGTTCGCAGATAACGTGATCCTCCTCGCGACAAGCAGTGCTCTCCTGGTCCTGATCTCCAAACTGGGTGGGATCCTGCCCCACAGCGACAGCCTGCTGCTCTATCTCTTCCTGCTGGACTTCGGAGTGTCCATCATCACCTTCAGCTTCCTcatcagtgtttttttcagCAACGCCAACGTGGCAGCTATGGGGGCTAGTCTGCTGTATACCATTACCTTTTTCCCCTTCATGATCCTGGTTGTGGTGCAGGCCCAACTCAGCTTCTCTGCTCAAAGTCTTGTTCCCAACTCCGGCACAGTGTTTGTGAACGGGACAGGAACCCACCAGGACCTGTGTGCGGTGAGGAAGGAGATGGGAGTGTGTCTGCAGCAAGATGTGCTGTTCCACTGTCTCACCGTCAGGGAGCACCTGCTGCTGTACTCGGCCATCAAAGCCCCTCACTGGGGGAAGACTCGGCTCACTCAGGAAGTAAATAGAGCTCTGGAGGAATCCGGGCTGAGTCCGCATCAGCACAATCAGGTGACTGTTCTGTCGGGGGGAACCAAGAGAAAGCTGTCGATCGCAATTGCTTTCATCGGCGACTCCAACACCATTGTCCTGGACGAGCCCACCAGTGGAGTGGACCCATCTTCACGGAGGGGTATCTGGAGCTTACTGCTGAAATACAGAGCTGGACACACCATTATCCTCACCACACATCATCTGGAGGAGGCTGCGAATCTCAGTGATCGGATTGTCATCTTGGACAAGGGCCAGCTGAAGTGCTGGGGCTCCCCGGCCTACTTGAAGGAAGTGTATGGAAGGAGCTGCAGCCTGACTCTCGTGACAGCTATTACTGCTCTGTTGATCAAGCGCTTCCATCACTGCCAGAGAGACTGGAAGGGGAGCTGGGCTAACCTACTGCTGCCAGTTATCTTTGTCACCATGGCGATGGCCCTGTTCACTGTGAAACCGCTAGTTATTGATTACCCATCACTCAGACTGACTCCCCAGATGTACAACAGCTCTGAAGGATGGTTCTTCAGGGTCCATTCTTCCTGCCAGCAATTTAGTAGTGGAGTGCTGGACTACAGCCATGATTCCTGCGACTGTGAGAAGGGGCAGCAGCAGGAAAGTATCCGACAGTGTGGCGTAGCCCTATGTGTCCTGCTGGGCTTCTCCATCCTGGGGGCCAGTCTGGGCACAGCTGTGGTAAGGGACCGGGTTTCGGGGCAGAAGCGTCTGCAGCACGTCTCTGGACTCGGCCACTCCACCTACTGGAGCTCCAATTTCCTCTTCGACATGGTGTTCTACCTCCTCACGGTGACCCTTTGTATCTGCGTGTTCGCGGCCTTCCAGTTGACGGCCTTCACGTTCAGAGACAACCTGGCCGCCACTGCCCTGCTGCTGGCTCTGTTTGGCCCAGACGTTGCATTCATCGCTTACATCTCGGTGAACTTTGTCCTGGGTTTTGGGACAGTCTTCCTGACTTTCCTGCCTCGCTTCCTGGCTCTCATCTCTCACCAAGAGAATTTGCAGAAGATGTACGACACCCTTCGATGGGCATTTATCCTGCTCCCTCAGTTCTGCCTGGGGCAAGGGCTGATTGAACTGTCTTATAACCAGATGAAGTTCGACCTGACACATCGCTTTGGGATTGACTCCTATGTCAGCCCATTCCGTATGAACTTTCTGGGATGGATCTTTGTTTCCATGGCGATTCAAGGCTGCCTGTTTCTTTCACTGCGCCTTTGGCTGAACTGGGACCTTGTCGAGCAACAgagAAGTGAGCAGTTTGTCCCCGAGGCCCTTGATCAGTCAGAAGATGAGGATGTAACAGCAGAACAACATCGGGTTCTTAGCGGGAAGCTGGGAAGCGATGTTCTCGTACTGCGGAACCTGAAGAAACATTACCGGCAATCCAAGGCAGTCAATGGCATTAGCTTGGGTGTCTCAAGAGGAGAGTGCTTTGGTCTGCTTGGTGTCAACGGGGCTGGAAAGACAACCACATTTAAGATGCTGACAGGAGATCTGAGGCCGTCTTCAGGACATGCCATTGTCAGAACTACTCAGGGGACAGAGCTAGAGATCAGGACTGCTAGTTCAGCGGGGAAGTTAATTGGTTACTGCCCACAGTCTGATGCTCTAGATGATTACCTTACTGGCTGGGAACATTTTTACTATTACTCTCGACTTAAAGGAATCCCAGAGGGCTATATCAAAGAAatatcccACAGTCTCATTGTTCGATTGAATCTGACTGCCCACGCTAATAAGCTGGTGGGGACATACAGCGGAGGCACCAAGAGGAAACTGTCCACGGCCCTGGCGCTGATCGGAAAACCTCAAGTGCTGTTACTGGATGAGCCCAGTTCAGGCATGGACCCTGTGTCAAAGCGATATCTCTGGAGGGTGATACTGAAGGAGCTCCGGGGGGGCTGTGCAGCTGTGCTCACTTCACACAGATTTGGAGGAGGGTACTCGGCTAAAGTATGGCTAAGTAAAGACTCATCAGACGCGAAAGCACTCACTCACCTTTTGACCTCACACTTTCCCGGCACATATCTGAAGGAACAGCACCTTGGGCTGATTGAGTACCAGGTGCCACAAAGGGAAGGCTGCTTATCAGACATATTCAGGCTTTTAGAAGAAAACAGGGAGAGTCTCCAAATTAAAAACTACTCCATCAGCCAAGCCACACTGCACCAGGTCTTCACTGAGTTGACACTTCAGCAGGAGGAATCAGCACACCAGAATCCACTCAGACATCAACACATGCGTGTGTAG

Function

GO: NA

KEGG:

id description
K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002440 True 4371 mRNA 0.51 29 14399187 14459606

Neighbor

gene id symbol gene type direction distance location
AMCG00002429 ino80c,LOC107706244 coding upstream 521390 13867114 ~ 13877797 (+)
AMCG00002424 tmem245,LOC103353896 coding upstream 680726 13700250 ~ 13718461 (+)
AMCG00002423 frrs1l coding upstream 702585 13691020 ~ 13696602 (+)
AMCG00002422 NA coding upstream 742629 13655239 ~ 13656558 (+)
AMCG00002418 erp44,LOC107593692,LOC107723539 coding upstream 887904 13490178 ~ 13511283 (+)
AMCG00002439 NA coding downstream 106793 14566399 ~ 14576984 (+)
AMCG00002442 NA coding downstream 146058 14605664 ~ 14614093 (+)
AMCG00002444 NA coding downstream 179270 14638876 ~ 14641950 (+)
AMCG00002441 ikzf1 coding downstream 196247 14655853 ~ 14666224 (+)
AMCG00002443 NA coding downstream 226462 14686068 ~ 14686970 (+)
G123171 NA non-coding upstream 29274 14369093 ~ 14369913 (+)
G123169 NA non-coding upstream 32852 14365036 ~ 14366335 (+)
G123043 NA non-coding upstream 808506 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 828376 13566414 ~ 13570811 (+)
G123039 NA non-coding upstream 852887 13546064 ~ 13546300 (+)
G123197 NA non-coding downstream 232375 14691981 ~ 14692776 (+)
G123295 NA non-coding downstream 803343 15262949 ~ 15340169 (+)
G123386 NA non-coding downstream 1229995 15689601 ~ 15689963 (+)
G123388 NA non-coding downstream 1334802 15794408 ~ 15795149 (+)
G123468 NA non-coding downstream 2026220 16485826 ~ 16489952 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 37651 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 1269490 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 1328355 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 1347216 13031759 ~ 13051971 (+)
G122746 NA other upstream 2258722 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 2498555 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 2516682 16976288 ~ 16985906 (+)
G123807 NA other downstream 3455830 17915436 ~ 17984730 (+)
G123989 NA other downstream 4372408 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 4614087 19073693 ~ 19127947 (+)

Expression


Co-expression Network