AMCG00002445 (fignl1)


Basic Information

Item Value
gene id AMCG00002445
gene name fignl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14680384 ~ 14682429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002445
ATGAGCGCGGCTCACCTGAGTGAGTGGCAAAGGAGGTCCTTTGACATTTCATCTGGCGCCTGCACACCTGAACAGAAGGCAGATGCCTACCGCGCACATGTTCTGCACATCCAGTATGCATGGGCAAACTCGGACATCTCCGAGGCCTGCGCTGGGAGTCTGCTCAGGAAGTACACGGAGCGGTACTCCTCTGTTGTGGACTCCAGCGACCCGCAGGCGGGGCTCAACAACTACGCAGACCACGTCCTGTATCTGTCCAGGTGTCAGAAGAACCACAGCACGCAGTGGGAGCCGTCCCTCACGCTGGAGAGCGCACTCAAGCTGGGGTGCGTGCAGAGCATGATTCAAGCTGGCGCCCAGCACAGGAATTCCCTGGTGGCACCCGCTGATGTGAACATAACGGTTGGGGAGGAGGCCGGTGATAATGCGCACAAAGGCGATCCCAAATCTGCTCCTCTGGCTGTGGCTGGCACTGGAGGCTCGGTGCTCAAACCCAGAGGCGCTCCGACAGCTGGTAACCCCCCAAAGGACGGCTTTGAGAAATGGAACAGCTGCAGTTTGGCCCCCAAGCCATGTGCTTTACCTACCGTTAACAGGCATGCAGGGACATCAGGTACATCTTCCTATTTTAACAACCGGCCTCCAGTCACTCCCCTCTTTGGCAACCAAGAATCACTGGGTCCACCTCCGCCCGGTAACAACCCTACAGCAGGGGGCAACCACCCCTACAGCAACCAGgcagcttttttcccctcttcgaACCCTGCAAAGCGCAAAATGTTCTACGGTGCAGGCGGTGAAAATAGTAGGGGATCTTTCCAGGGATCTGGGAATCATCAGCAGTGTGGTCCAGATTCCAGAGGCTCCTCTGAGGCCAGAAGGCAGGAAGAGAGCCGGGCCACCAGCTTCAGGACGGCGAAGGATCAGTGGTTTGTGGAGCAACAGAAGAGACACAACAACCAGCCCCAGCGAGCCCCACCTGCAGTGTCTGGCGGCGGGGCCAAGAAATCCCTGGGTGCCAACAGGTCGAGGGGAGCCTTCGGAAAGTTTGTGTCCCCCATGCCAaggcaggaggaggaagatTACGGTGGGGCAACATCGACCAGGGTGTCCGGGTCAGAGAATGGTCCTCCAGTGGACGAGCGGCTCAAGAATTTCGAGCCGAAAATCATCGAGCTGATCATGAGCGAGATCATGGACCATGGCCCCCCGATCAGCTGGGATGACATTGCCGGACTGGAGTTTGCTAAGGCCACCATCAAGGAGATCGTGGTGTGGCCCATGCTGAGGCCGGATATATTCACCGGGCTGCGCGGGCCCCCCAAAGGCATCCTCCTGTTTGGGCCCCCGGGAACTGGCAAAACGCTGATCGGGAAGTGCATTGCCTGCCAGTCTGGGGCCACCTTCTTTAGCATCAGCgcctcctccctcacctccaaGTGGGTAGGTGAGGGGGAGAAGATGGTGCGGGCACTATTCGCCATCGCCCGCTGCCACCAGCCCGCCGTCATCTTCATCGACGAGATCGACTCACTGCTGTCACAGAGGGTGGACGGCGAGCACGACTCCTCCCGCCGCATCAAGACCGAGTTCCTGGTGCAGCTGGACGGTGCCACCACCTCCGCCGACGACCGCATCCTGGTGGTGGGCGCCACCAACCGGCCGCAGGAGATCGATGAGGCGGCCCGCAGGCGGCTGGCCAAGAGGCTCTACATCCCCCTTCCGGAGACCTCTGCGCGCAAGCAGATAGTCAGCAACCTGATGTCCAAGGAGAAGTGCCAGCTGGTGGAGGAGGAACTCGAGCGGGTTGTCGGCAGCTCCGAGGGCTTCTCCGGGGCAGATATGACCCAGCTGTGCCGGGAAGCCGCTCTCGGACCCATCCGCAGCATCCAAATCTCAGACATCGCCACCATCCGGCCCGAGCAGGTGCGGCCCATACTGTACTCGGACTTCCAGGAGGCCCTCAGGACCGTGCGGCCCAGTGTGTCCACCAAGGACCTAGAACTGTATGAGCAGTGGAACAAAACCTTTGGCTGTGGCCGCTGA

Function

symbol description
fignl1 Enables protein-macromolecule adaptor activity. Acts upstream of or within microtubule cytoskeleton organization. Predicted to be active in nucleus. Is expressed in head; nervous system; neural tube; tail bud; and vertical myoseptum. Orthologous to human FIGNL1 (fidgetin like 1).

NR:

description
PREDICTED: fidgetin-like protein 1

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22766 FIGNL1; fidgetin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002445 True 2046 mRNA 0.60 1 14680384 14682429

Neighbor

gene id symbol gene type direction distance location
AMCG00002438 NA coding downstream 310564 14365055 ~ 14369820 (-)
AMCG00002435 NA coding downstream 528539 14127804 ~ 14151845 (-)
AMCG00002436 NA coding downstream 578985 14070785 ~ 14101399 (-)
AMCG00002434 NA coding downstream 636480 13990906 ~ 14043904 (-)
AMCG00002433 NA coding downstream 713917 13966110 ~ 13966467 (-)
AMCG00002448 NA coding upstream 13969 14696398 ~ 14731127 (-)
AMCG00002447 NA coding upstream 79408 14761837 ~ 14787948 (-)
AMCG00002446 NA coding upstream 112658 14795087 ~ 14849774 (-)
AMCG00002452 LOC104940895 coding upstream 229026 14911455 ~ 14920505 (-)
AMCG00002453 NA coding upstream 293677 14976106 ~ 15005344 (-)
G123179 NA non-coding downstream 85842 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 91626 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 113317 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 137364 14542821 ~ 14543020 (-)
G123152 NA non-coding downstream 569183 14078244 ~ 14111201 (-)
G123204 NA non-coding upstream 9541 14691970 ~ 14692999 (-)
G123346 NA non-coding upstream 798715 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 1005026 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 1040504 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 1108176 15790605 ~ 15795172 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1026137 13649227 ~ 13654247 (-)
G122862 NA other downstream 1650978 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2674032 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 2807522 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 2825493 11848470 ~ 11854891 (-)
G123263 NA other upstream 258831 14941260 ~ 14946311 (-)
G123585 NA other upstream 2153727 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2275733 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 3007579 17690008 ~ 17706289 (-)
G123829 NA other upstream 3240023 17922452 ~ 17989465 (-)

Expression


Co-expression Network