AMCG00002446


Basic Information

Item Value
gene id AMCG00002446
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14795087 ~ 14849774 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002446
CAGGCGCAGTGCTGGCTTTCACTTGAGGGGAGATGAGAGACGGCGAACGGGAAGATAAGGGACACGGAAGAccagaagaaggagaaaagtcACCAATTAATAGTGCACCCACCGCCCCGCGTACGACAGCCGAGTTGGCTTCAACATGTTTAAGAAACTGAAGCAGAAGATAAACGAGGAGCAGTCCCCGCAGAAGAGTGCGCAGAGCCCGCAGCAGGCCCAGACTCCTCCTGCCACTGCAGCCTCCCCCGCGGGCACCCGTGGCCGAGCCTCGTCCCTCTCCCTCCGCCAGGATGACAGCACCATCACTCCCGATGACAGAGAGAATGTAACTAAACCCATCACGGAAGCCGCCAAATCCCCCGGCAGTGTCAATGGAGACGAAACAGACTCCCCACAGAAGCAGGAGCCCCAATCCTTTGCCAAGAAGCTGCAGCTACGCGTGCCCTCCATGGAGTCCCTGTTCCGCTCCCCGACCCGAGAAGGGCTGCTCCGCTCCCCGTCCCGGGAGAACCTGGTGCGCAGCTCCTCCCGGGACTCCCTCAACCGCCTGGGGGACGCCGAACCCCTCGGCACGCCCGCCTACGACCCCCCGTCAGACATCGAGAGTGAGGCGGAGGAGTCGCCGGGCAGTGTGGACAGCCTGACTAAGGAGCAGCTCCAGCACAGGCTGCGCAGGATGGAGAGGAGCCTGGGAAACTACAGGGGGAAGTACTCCGAGGCCATTCTGAGTCAGAGCCAGGACAAGGCTCTGCGCCGGATCGGGGAACTCCGAGAGGAGCTGCAGATGGACCAGCAGGCAAAGAAGCACTTGCAGGAGGAGTTTGATGCTGCGCTGGAGGAAAAGGACCAGCTCATCACAGTGCTGCAGACCCAGGTGGCTCTGATGAAGAAACGCTTGCCCAGCGGCCAGGGGGAGGCAGAGCCCAGTGAGATTGCCAGCCAATCTGCAGAGACGCTCGGGGCCGAGTCCTCCCCCCAGAGCCCCTCACAGGACATCTCTGAGACCAGCCTGACGGAAGAGGGCAGTGCGGACACAGCCAAGACCCTGGAGGCCCTGCAGCAGCGCGTGAGGAGGCAAGAGAACCTGCTGCAGAGGTGCAAGGAGCTGATCCGCACCCACAAGGAGCGCAGCACGCAGCTGGGCAGTGAGAAAGAGGCCCTGcaggagcagctgcaggagcggctgcaggagctggagaaaATGAAGGAGCTGCACACAGCCGAGAAGACGCGGCTCATCACGCAGCTCCGTGACGCCAAGAACTTGATTGAGCAGCTGGAGCAGGACAAGGGCATGGTCATCGCCGAGACCAAGAGACAGATGCATGAGACCCTGGagatgaaggaggaggagattGCCCAGCTTCGCTCTCGCATCCAGGTGGCGACCGCCCAGCGAGAGGAGCTGAAGGAGCAGAAGGAGAAGTCGGAGAAAGCCGCTTTCGAGGAGCTGGAAAGAGCTCTGAGCACCGCGCAGAAGGCAGAGGAGGCCCGGCGGCAGCTGCAGGCCCAGCTGGAGGAGCAGGTCAAGGCTGTGGAGCGGGCCGGCGAGGAGGAGCGTAAGAGTCTTCAGCAGGAGCTCTCCCGGGTCAAGCAAGAAGTGGTCAGCATAATGAAGGAACGCATGGCGGAGGCAGAGAAGATGCATGCGGAGGCGCTGGCCAGCCGGGAGAGGGAGCTGATGGACAGGCTGCAGGAGCGGGACGCCCAGATCGAGGAGCAGGTCCGCCATGCTGTGGAGCGGTGCCGTGCGGAGCAAAGTCAGGCCCTGCAGGAGAAGGAGCAGCAGGCcgccctggccctggaggaggTGGAGCTCCAGAAGACTGCCTTGGAGGCAGAGGGCAGGAGTCGCCTGCAGGTGCTGGAGCAGGAGTTGGAGACGGCCAGGATGagACTTCTGGAACTGGAAAGCTCCCTGGAAAAAGCGTCACAAGACGGCTCGACACAGTTGGGCAATGTGGCGGTGCAGATTGAGCACGAGAAACAGAAGCATCGGGATGAGATCTCGACTTTGATGGAAAAGCACAAGGAACAGCTGGAAAGTCTCAGACAACAGTTGGAGGTTGAACAACTGGAGATCATGAAGCAGCAGCACCTGGTTGCCATGGAGGAACTACGGGAGAAGCACCAGCAAGAGCTCGACGCGGTGCTGAAGGAGAAGGAGTCCCAGTTCCACGCACACATTGAGGACATGAACCAGAAAACGCTGGAGAAACTGGACGTGAAGCAGACCGAGCTGGAGGCTCTCTCCTCAGAGCTTTCCGAGGTGCTCAGAGCCAGGCAGCTCCTGGAGGAACAGCTGCTGGTCTTGAAAGATGCTACAAACTCGGTCAAACAGGAGTATGAGCTTAAACTCCAGCAGGAGAAATCAAGGTACCAGGAGGAGATTGAAGGTATAAAATCACAGCACGAGCAGTCTCTGGGAGGTGTGGAGAAGACTCTGAAGGAGGAGCTCAATAAGCTTAAGATGGTCctggaagaaaaggaaagagtgCTGGAGGAGCTACAGTCACGGGAGCAGGGCCTGAAGGAGGAGGCGCAGATAACACATCAAGACCTAAGTGTGAAGTTAGAAGAGCTGACCCTTTCATATCACAGGGTGCAAGAGGAAACCCAGGAGCAAAACAATACACTTGAGGAGGCAAAGAACCAATTTTCTCTGGAGTTGCAGGAGGTAAGGGAAAGTCTGAAAAGGGCGGAGTCTGAGAAAGAGGCATTGATTGAGGGCAGTGTGAAATTGAATGAGGTGACCTCTGAATTGGAAAGATGTAAAGGTCAGGTGATGGAGCTCGAACTGCAGCTAGAGGAAGTGCAGAAACAATCCAATCagaaagctctctctctccaagaaGAGCATGCTGCCAACATAGCTGAGCTCCAGGACCAGATAGTAAAGGTAAAGAAGGAGTTGTCTGAACGGGAGCAGTCTTTCCAAGAAACACTGGAGGTTCACCGCCAGCAGGAGGACAGTTTGAAGAAGAAGCTAGAGGAAGAGCAAGCTGCCGCCAAGCAGAGACTAGAGGCTGCAAAGACCGAGTTAGAAGGCACAATTAAAGCGCATGTagcaaagatggacaaaataaagcaGAAGACGAAGGAGATGCaggagaagtttaaaaaaaagctcTCCGAGCAAGAAGAGAAACTGAAAGGGCAGCTGGCAAAGAAGGAGGATGAGCTAGCCCATAAGGACAAGCAGTTAAATGACAAGATCCTGGAAATGGCCCATGCTAGCTCGGCTGGCATCAGTGATGCTGTATCTCAACTGGAAGCTGCCCAGAAGGAGCAGCTGGAGAACCTGCGGGGGGCTCATaagaaggagctggaggagctcaCCCTGAACTGGCAGAGGAAGCTGGaccagctggaggaggaggtaCAAGAGAAGCATGAGGCTGAGCTGCAGGAGAAAGTACAGGAGCTGGCAGAAGTCAAACAGCAGCTTGCAGGCACCAGTGATGAGAAGGAACATGTCCTTCAAGAAATAAAGGACCTCAAGGAAGAACTGGCCATGAGAGAGACCACAGTGCAAAAGCTTCAGGCAGAGCTGAGGGAGGCCGCTACCAAGGTGGAAAATTTGTTACAGGGTGAAGTAATGCTGAAGGAACAGTTTGAGGCAATGGAGAAAAACCTCAATCAAGCTTTGAATGAGAGGAACTCCCTTCAGGACCAACTCTGTAAAGTTGAAGAGGAAAGCAGAGACAGGCTTCAAGTATTGACAAAAGAGTTGGAAGAGACCCAAAGCAGGTTACATCTTCTTGAAGCCTCAAGCTGCAAAGAAGGTGAGGACCTGCAGAAGAGACTCGAGGAGAAAGTCTTTGAAATGCAATCTAAGGAAGAAGAATTCAGAAACCAACTCggtgaaataaataagcaattgGCTCTGTCTTGTAATGAAGTTCAAATGAAAATTGATGACAAAGCTAATGCACTCCGTGGTAAGTTGGACAGCAGAGTCAGTGAACTTAGTGACAGAGTTGCCTGCAACCAGAAGCGGGTAGCACAACTCAAAAATGTCATCCTGACTAAGATCAACCGAATCCGCACACTGGAGGAACAGCTACAGCAGAGAACAGAGGAGAAGATCTGTTTAGATACTTCAGTGCTGCAGATGACTCTTCAGCTAAAGGAGAAGGAAGACCATATCCAAGCCTTATCGACTGAGAAGGAATCTTTGCAGAAAGATGGTAGCTGTAACTTGCAGATCCTCTCAGAGAAAGACCTTTGCATTGAGCAGTTGAAAAAGGACCTGGCTATGAGTGCAGAAGTCAGTATGGCCATTTCAGGAAActtgaaagaaaaggaaactcaTATCACAAATTTGGAGAGCTTAGTAAATGATTTGAAGACCCAGCTCGAAAACAGTCAAACAGGCAAAGAAGCCATATTGGCACTTAATGAGCAGCACAAGGAGGAACATCAGAAGCTAGTAGACCAAATGAAAGATCTATCTGGGACTTTACAGACTCTTAACAAAGAGAAAATGTCAGCACTGGACCAGGCTGAGCAATTAAAGAACAAGCTGTCGGAGTGGAAGAAGAAAGCCGAATCCAAGTTCACACAGAACCACACTACTGTCAAGTCACTGCAGAGCAAAGTGGAAGACTTGGAGAAACAGATAACTGAAAAGAATGAACAGCTGGAGAGAATGTCAGTCTCCATAAATCATCAGTCCATTAGCAAGTCTGAGATAGATCAGACCTTGAGCGAAAAAGAGTTGAAAGTCAGTGAGTTATCATCTGAGGTACAGATCTGCTCGTGTCGGATAAAAGAGTTGGAGGAAGAGCTAGCCAAAAGAACAGAGCAACATGAGCAATTAATTGCAGATTTGGAGAAACGGAGTCAAGCCAAGGAAAGTGAACAGAAAGAGCTGGTTATACAGCTACAGCAGGCCCAGGTTCTATCCTCCGAGAAAGGGAGCCTGGTACAGGAGACTGAAGGGAAGCTGCAAGCCCTCGAGAAGGAGACTGAAACACTGAAGCAGGAACTTTGTCACCAGATGGAACATTTTGAGAAGACAAAAGCGGAACTCCTGAAGAGCAAAGAGGAGGAGCTGAAGGCAGCAGAAGAAAGGCTATCTGCAGAGAGCACAGGTAAACTAGCAGAGCTGAAGAAGAAGGCAGAGCAGAAAATCGGCATGGTGAGGAAGCAGCTGACTTTACAGTTGGAGGAGAGGGAACAAGCCGTGAAAGCCTTGGAAGTTCAGCTGGCCGAGCTTAAACAGAGcatgggagagaaagaggaatgTGTAAAAACCCTTCAGGGAAAAGTTCAGTCTCTAGAAGATGCCTTAAGAGTCGGGAAGGAGGATCTGGAAAGGCAAATGGAAAACGTGAGCGAGGACTATAAGCTGGAGAAAGAGAATACCTTACAGAGGTTAAAGGAAACCTATGAGGAGAAGCTAGATGCTTTTCAGAAAGCAGCTGCTGATGCAGACATGGCAATGCAGAAGATTCACCAGGGCAAGATGGAAAGGGGATATGCTCAAGAAGAAGCCCAGAAAAGGTACGAAGAGCTCCTGAACAAGCTCCACCAAGCAGAGGAAGAGAAATCATGTCATCAAGCAGAAATCAACAGGCTTGAAGCAGAACTGTTGAAACAGACTGACTTGGTCCAGCAGCAATCAACAGGGGTGGAGACTGACCTTCAAAAGCAGTTGGAAGCCAAGGAAGAAAAGATTTTGGAAATGCAAAGCAGCTTGGAGGAGTTGAAGAGGAACGTGCAGGAGAGAGAATCAACGGAGAAATTACTGGAGAAGAAAGTCAAAGAGGCAGAGGCCTGTTTGGCCAAGGAGAAGGAGGACCTTAAATGTGAGAAGGACACCTTGACCacagaatatgaaaaaaaactaaaggacCTGCAAAACCTGCTGGAGGAGAGCAATTCTCTTCTCAGGACCTATGAGGATGGATCAGACGAGAAGAGCAGGTCTGACCCAGATGGTCTTGTGTCAGACATGAGGGCTCAACAGATGGAACTCCAACGAAAGCTGACCGTGGTGGAGAACGAGAAGCAGAAACTGCGAAAGGATTTTACCACACTACAGAAAGACCTCCGGAGTTTGAGGAAAGAGCATGAGAAAGATCTGGAGTATATGAAGAAAGAGCTGACCGATGAGCACGAAAAGAAGCTGAAGCTGGAGCTAGAAGATGTGGAGATGAAGCACAACTCGGGGCTGAAGCATTTGATGAGGGAGTTCAACACACAGATGGCAAAGAAGGAACAGGAGTTTGATTCTTCAATAAAAGAAGCTAttgGGAAGGCCCAGGAAGTGGAGCACCAGCTGCTGGAAACGCACCGTGAGGAGACCATTCAGCTGCACAAGAAGATCGCGCAGAAGGAAGACGACCTCAACAGGACGAGTCGAGAGGAGGAGATGACAGCACGAGTGGATGAAATACAaaaggagctggaggagctgaaggCCGAACGAGAGCAGAGGCTGAACGATGAGAAGAATCGAAACACTCCACAGggAACAGTGACAGAGCTGCAGATCCATTCACTTGAAGATAAACTAAGATGTTTCCATAAAAACTCAGTTGTGACTCACTTAGGAACACCATATAAAGATGGAAACCACAGTGGTGATGCCTTCTCAGAGCCCACGGAGTTCGAGTACCTGAGGAAGGTGATGTTCGAATACATGATGGGACGAGAGACTAAGACGATGGCAAAGGTTATAACCACAGTTCTCAAGTTCCCTGAAGACCAGGCACAGAAGATACTAGAGAAGGAAGATTCTAGAACACTAacTTGGCTGCGCTGAGATGCCCGATGGAGTCTTGAAGAAATTCAAGAGGAATCAGTGACTAAGCTGCTGACAGAGCTGGCCAGGAGTTGGTATTTGATACCAGAGGGGCCTGCCAGTGACTTTTAAACTACACttcttaattttactttttatggtttccttttctttcatttttttattttggaaaaaggGTAAAACGAGAAACTAGATGGTGTACTTGGGAAATACTGCCTGTAATGTGCAGCTCAGTTAGAATGACTGTAATAGTGTTATATCTAGTtccaaatgaataataatatgtattatgacATTATATCAGCTTCTAATCAGAGGTTCGGTGGTGAAATTGAGTATTTCTTCCTTCAGGTCTCTTTGTTTAGATCTAGTACGAATGGATGGATTGTGCAATAAATTTGatatctttttttctctttcgtTTGTCGGTTACTTTCATCCCTTCCTTGCTTTCCGTGTTCACTCTGTCTTTGTGTGGCTTTGTGTTaattctctgctctgtgcttcTGCTGATACTGACACTGGACTGCAGTACCTCGATTGTTTACTATAGCTTTTGTACTTTATATTTTCTGGGGAAAAATCATACAAACGTGTTCgactgtaaattgtaaataactGATTGAAATCTGTATCATAGAGCATATTGTGACTGTTGGtatgttaatacatttgaagaGGAGCtaataaagttttatttacactatatatacata

Function

GO: NA

KEGG:

id description
K20283 GOLGA4; golgin subfamily A member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002446 True 7491 mRNA 0.50 22 14795087 14849774

Neighbor

gene id symbol gene type direction distance location
AMCG00002447 NA coding downstream 7139 14761837 ~ 14787948 (-)
AMCG00002448 NA coding downstream 63960 14696398 ~ 14731127 (-)
AMCG00002445 fignl1 coding downstream 112658 14680384 ~ 14682429 (-)
AMCG00002438 NA coding downstream 425267 14365055 ~ 14369820 (-)
AMCG00002435 NA coding downstream 643242 14127804 ~ 14151845 (-)
AMCG00002452 LOC104940895 coding upstream 61681 14911455 ~ 14920505 (-)
AMCG00002453 NA coding upstream 126332 14976106 ~ 15005344 (-)
AMCG00002454 NA coding upstream 211073 15060847 ~ 15111866 (-)
AMCG00002455 LOC102778215 coding upstream 488313 15338087 ~ 15362568 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 658674 15508448 ~ 15534012 (-)
G123204 NA non-coding downstream 102088 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 200545 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 206329 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 228020 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 252067 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 631370 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 837681 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 873159 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 940831 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1274508 16124282 ~ 16127405 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1140840 13649227 ~ 13654247 (-)
G122862 NA other downstream 1765681 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2788735 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 2922225 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 2940196 11848470 ~ 11854891 (-)
G123263 NA other upstream 91486 14941260 ~ 14946311 (-)
G123585 NA other upstream 1986382 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2108388 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2840234 17690008 ~ 17706289 (-)
G123829 NA other upstream 3072678 17922452 ~ 17989465 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location