AMCG00002452 (LOC104940895)


Basic Information

Item Value
gene id AMCG00002452
gene name LOC104940895
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14911455 ~ 14920505 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002452
GTTTCCCCGCGCTGGCCGTGTTTACAGCGCGGCGGTGGTGTgtttgaataaatacagaaatgtctgTAAGTGAGTCGTGCTAGATTTACTTCACAAGTGTCATTTTCGCCCTCAATTGATACTACGATGGCCGGGGTTATCCGACGGCTGGACGAGGTGGTAGTAAACCGGATTGCGGCCGGAGAAGTCATTCAGCGGCCCGCTAACGCCATCAAGGAGATGATAGAGAACTGtttggATGCCAAATCCACCAGTATTCAAGTGACGGTGAAGGAGGGGGGGCTGAAACTAATTCAGATTCAAGATAATGGCACTGGAATCAGGAAAGAAGATTTGGAAATAGTGTGCGAGAGGTTCACGACCAGCAAGCTTCAGACATTTGCAGACCTCTCGGCAATATCTACCTATGGTTTCCGAGGGGAGGCACTTGCCAGTATAAGCCACGTGGCTCATGTAACTATTACCACCAAAACAGCTGATGGAAAATGTGCATACAGAGCCAGCTACTGTGATGGCAAACTGAAGGCACCTGCCAAACCATGTGCTGGAAACCAGGGCACACAGATCACAGTTGAAGACCTTTTCTACAATGTGACGACACGGAGGAAAGCCCTGAAAAGCCCCAGCGAGGAGTACTCCAGAATCGTGGAGGTGGTCAGCAGgtatGCCATACACAACTCTGGTAAAAGCTTTACTGTGAAGAAGcaaGGGGAGACTATGGCAGATGTCCGAACTCTGCTGAATGCTTCGACAGTGGATAATATCCGGGCTGTGTTTGGCAATGCTGTGAGCAGGGAGCTGATTGAAGTGGGCTGCGATGACCAGAAACTGGCTTTCAACCTGAAGGGCTTCATCTCCAATGCCAACTACTCCGTCAAGAAATGCATCTTCCTGCTCTTCATCAACCATCGTTTAGTAGAATCCAGTGCCTTGAAGAAAGCCATAGAAACCGTCTATGCTGCGTATCTCCCTAAAAACACTCATCCCTTTCTTTACCTGAGCTTGGAGATTGCAGCTCACAATGTCGACGTGAATGTGCATCCCACCAAACACGAGGTGCACTTCCTGCACGAGGACAGCATCATAGAGAGTGTGCAGAAACACATCGAGGGCAAGCTGCTGGGCTCCAACTCCTCTCGCACCTACTTCACCCAGACTCTGCTCCCTGGACCGTCGGTGTCCTCCAGTGACGTGGTGAAGCCAGGTCCCAGCTCCGGATCGGGCTCCAGCGACAAACTCTACGCCCACCAGATGGTGCGGACTGACTGCCGGGCCCAGAAACTGGATGCCTTCCTACAGCCAGTGGGCAGGCCAGCCCCGGGTTCGAAAGCAGAGGTGTCGGACACTCTGGAGTCCGAAGAGACCTCAGGGATTCCAACGTCTGACCAGCCCTGTGACACTGACATGGAGGAAATGAGTGACAAAGAGCTGGTGGCTGCCTTCGAGGAAGAACCAGAGACCGACACACACAGGGACTCCACACCCCCCGCAGACCCTCCTGCCAAGAAGCGCCCCAGGACCAGCGGTGACGTGGAGATGAAGGAGACGGAGAGCGAGAGCAGTCTGACGGCCGCCGCCATCCCCAGGAGACGGGTCATCAAGCTCTCGAGCGTCAAGGAGCTGCGCGGCTGCATCACCGAGCAGACCCACACGGGTCTCCAGGAGATGCTGCAGAATCACTCCTTTGTGGGCTGCGTCAATCCTCAGTGGGCTCTCATCCAGCACCAGACCAAACTGTACCTCCTCAACACCACCAAGCTCAGccAGGAGCTCTTTTACCAGATTCTAATATACGACTTTGGGAATTTTGGAGTTTTACGATTATCAACCCCAGCCCCTCTGTATGACCTGGCCATGCTGGCTCTGGAGAGCGAGGAGAGCGGCTGGACGGAGGAGGACGGGCCGAGAGAGGGGCTGGCCGAGTACATCGTGGACTTCCTCAAGAAGAAGGCGGAGATGCTGGAGGATTACTTCTCCATGGAGATCGACCAGGACGGGAACCTCACTGGGCTGCCGCTGCTGCTGGACAACTACATCCCAGCGCTGGAGGGGCTGCCCATGTTCGTCCTGCGTCTGGCCACGGAGGTGAACTGGGACAATGAGAAGGAGTGCTTCGAGTCCTTCAGCAGAGAGTGCAGCCAGCTCTACTCCATCAGGAAGCAGTACATACTGGAGGAGCCGGCGGAGTTGCAGGCTGAAGAGCTGGGGTCGAGCGGGACGTCGTGGAAATGGACCGTGGAGCACGTGGTCTTCAAAGCCTTCAGGACGCTCCTCGCGCCGCCCAAGCGCTTCACGGAGGACGGGAGCATCCTGCAGATCGCCAACCTGCCCGACCTGTACAAAGTGTTCGAGCGCTGCTGAGCCGCCTTCCTGCGGAGGAGGGCACTGTGGAGTGGATTTGAGGACTGTCCAAAACTGGAGGCCGAGATTTAAGCAATGACACAATCTGAACTTTGATCTTCAGATTCAGACTGATGGTCTCTCACTGAGCTATAGTAATAAATGTTTGagttcacacacacatggagaaaaggaaatgtttatcaattcctttaattttctttatctgactatatattttttgactactgaaaaataaattattttgtactagtacttttttttttcctcttataCCCCCCATCAGTCAGAATGAGTATATGTCTCTGTGCTCTGGATACAGGGAATAAAGATAGTAACACATGGTTAATTTAACTGTATGACGGTCAGCGTGCTAAATTTAAATCCTGTTCTCACTTTCTAGAGTTCAGCGATGAGACCAGGTCTTTAATTGAGGAGAATTAAGATGGCCCTTGTTCAGAGTGATGTGTACTGCTGAGGCAGACTGTTCACATTACCATTACCATTACCATTGAGTTTTCAAATGACgggacacaaattaaaacacattcgCTAATGGAACATGACTCTGGGAGTTGACTCGGTAAACAAGAGGCACGGTGCACACTTATCAGAATGCGTCTGTTTCCTCCTTCCTTGTGAGAATGGTAATCTCCAATATGTGGGATTATTCACAAAGATACAGCTGTCACATGACATGGCGCTATTTAAGTTTTAACTGTGCAAAAAACCAGTTCAAGTATTCTTACAGACCTTATTATAcacaatgtgatatatatataccccaG

Function

NR:

description
PREDICTED: DNA mismatch repair protein Mlh1-like

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0043060 meiotic metaphase I plate congression biological_process
GO:0007283 spermatogenesis biological_process
GO:0051026 chiasma assembly biological_process
GO:0007141 male meiosis I biological_process
GO:0005634 nucleus cellular_component
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K08734 MLH1; DNA mismatch repair protein MLH1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002452 True 3149 mRNA 0.51 19 14911455 14920505

Neighbor

gene id symbol gene type direction distance location
AMCG00002446 NA coding downstream 61681 14795087 ~ 14849774 (-)
AMCG00002447 NA coding downstream 123507 14761837 ~ 14787948 (-)
AMCG00002448 NA coding downstream 180328 14696398 ~ 14731127 (-)
AMCG00002445 fignl1 coding downstream 229026 14680384 ~ 14682429 (-)
AMCG00002438 NA coding downstream 541635 14365055 ~ 14369820 (-)
AMCG00002453 NA coding upstream 55601 14976106 ~ 15005344 (-)
AMCG00002454 NA coding upstream 140342 15060847 ~ 15111866 (-)
AMCG00002455 LOC102778215 coding upstream 417582 15338087 ~ 15362568 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 587943 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 686536 15607041 ~ 15616265 (-)
G123204 NA non-coding downstream 218456 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 316913 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 322697 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 344388 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 368435 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 560639 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 766950 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 802428 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 870100 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1203777 16124282 ~ 16127405 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1257208 13649227 ~ 13654247 (-)
G122862 NA other downstream 1882049 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2905103 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3038593 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 3056564 11848470 ~ 11854891 (-)
G123263 NA other upstream 20755 14941260 ~ 14946311 (-)
G123585 NA other upstream 1915651 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2037657 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2769503 17690008 ~ 17706289 (-)
G123829 NA other upstream 3001947 17922452 ~ 17989465 (-)

Expression


Co-expression Network