AMCG00002453


Basic Information

Item Value
gene id AMCG00002453
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14976106 ~ 15005344 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002453
GGGAAAGAGGCGCATCTCTGAGGGAGCAGACGCGGAGAGACTGCCTTAGTCTGCGTTTGCACTCATAGCTCCAAAgtctctctttttcttattcgtggttgttttaaaattagctgcttttaacttttttgtttgtctatCAGAGAGATATAAATCAATTTGTCACTTATACTTtgtactactactgctgctaggACTACTCCAGACTTGGGCAGTAGTGAGGGACATGCCGCCCGACAGGCGGGTCTGGGTTTAGGGACTTGTCTCCACAGCCACTATGTAAAGCGATACGGGGGAGTCTCGGAGAGCAAAAGCAGCAGAGAGGGGCTGAAGAACTGGGGCTGTCAGACCAACATGATCCCCCCAGCCAGCCACATGCTGGAGGAAGACAgcatggaaaaggaaaatgaacGACAGCCGGAGATGCCTCAGTCTCCCGCGTCCACCGCCAGCCAGCAGGAGTCAAAGCTACAGAAGCTGAAGAGGTCGCTGTCCTTCAAGACGAAAAGCCTCAGGAGCAAGAGCGCAGACAACTTCTTTCACAGGACTAACAGCGACGTGAAGCTACAGGTGGACCTGCTGTGTGGCGTCAGCACCAGCACCGGGCAGCTGGCCACTTCAGACAGCCACTTCTCGTCCCCCACCAAAACCCTGAAACCACCCGAGGCCACGGTCCATAGCTTCTTAGAGCACATCTTCAAGAAGCCCACGTTCTGCGACGTCTGCAACCACATGATTGTCGGCTCCAATACCAAACATGGTCTTCGCTGCAAAGCCTGCAAGATGAGTATCCATCACAAGTGTGCAGATGGCGTTGGACCACAGCGATGCATGGGCAAGCTGCCGAAGGGATTTCGCCGCTACTACAGCTCCCCGCTGCTCATCCAGGAGCAGTTCAGCTGCATCAAAGAGGTGATGCCTATTGCGTGCGGCAGTAAAGTCGATCCTGTGTATGAGACTCTGCGATTCGGGACCTCCCTGGCACAGAAGACCAAGAAGTCCAGCACGGGGAGTGGCTCTGAATCACCACGGCGAAGCTCTAACACTGACTTGGCTGAGGTGCCCGAAGAAGTGGATGCCCAGAGCAGCCTCCCAGAGCACACCAGGAAGCACAGTGACAGCGTATTTACTTCGCTAGAAAATGGAACAGAGCATTTCCACTCTGGAGAGAAGAAGCAGGAAGAATCCCCGGTGAAAAGACAACAGCGAAAGGATATATTGCAGCTGAACACCTATGTGGCCTTGTACAAATTTATACCACAGGAGAATGAAGACTTAGAAATGAGGCCTGGAGACCGAATCATATTAGCAGATGACTCCAACGATGACTGGTGGAAGGGTGTAATTGAAGACAGAATTGGATTTTTTCCTGCAAACTTTGCTCAGCAGGTGAGGGCAGGTGAGAGGGTTTACAGATGCACAAGGACTTTCATTGGCTGCAAAGAACAAGGACAGATAACACTGAAGGAGGGCCAGATTTGTGTGAGCGGCGAGGAAGAGCACCATGGCTTCATTAAAGTGTCTAGTGGAAAGAAGAGAGGATTTGTACCGTTTGATGTCTTAGAAAATGTTTGATGGGGTGCAGTCCCAGAGACGCGGAGCAGTGACGCTCACCCTTTGCCGGCAGCTCTTTTGCAGACCGCGATGAACGCTGAGATCCAGACGGAAAAACCGCCACGGGAATTTCAGGAGATAAGCAAAGTGGAAAGCACTGTTGGGGGATACAGGTGGACCAGAATTCCCACAACAACACAATGAAACTGTCCTCACTGCAGGGTTTTCTGACTGCCTCTCTGTTCCTTAGCTAAGAAATGGCAAGGAGAAAAGAGATTATCATGCTTTTGGGGAAGCAGAAACACACATGACTTTGTATGTGTGAGCCGTGTCTAAATCCAGGCTGTgtcctgtttttgtgtgttatttgtttcaGTATGGGAGGATTATACTTGACTTGTCACTTAGACTGTCTCTGAGAATGGGGAACAAAGACGTACCAATGTGGTCTCTTTGCTGTCTGGATGCACACAGATGCTTTACAGTTCTGAGGCAAGATTTTAGCACCTGAGTATTTATAGCCACAGAGAACTAGGGACTCCGTCTGTGTGAAGTATGTGTGTGGAAGACTTGCAGAATAGCTTCTAAAAGGTACCCGATATTTGTTTACAGAACttttttcaacaaatatttCTAAATTTATATATTAGATGAGATGTCTTTATTTAGGGTTGGTttgatatatattcttattaagGCTACCCCACCTGTTGAAACTCTATTAGCACCATAGCTTGTGAATATCAGATAGTAATGGCCAATGGCTTTAACGttcagagatttattttagtttcatcaaATTTATAGTCAATTGACTTAAGCTTatattaaagataaaaacattcaaatgagtCCAGTGTATTAAGTTAGTTGAGAACTGGCACTTACATTTATACCTATATAGAGCATCTGTATGGCATTTAAATGTGGAATATTTAAACAACTGATATATGAATCAAGGGGTTTATGAAAATTAACAAAGGCTCTTATAAGCAAATATCAATTATCTATATCTGCTGTATataagatgttatttttttcctctctgatCAGCAGTCGTTTCTTTGGGGAGCAGTATTGTTCTTTTAACTACTTTTGTTTCTCATTGTTTGACAAAGTCTATTCAGGGAAAAGTGGATagagaaataatgtattcatttctaGTTCTAgaatgttacaaaatataaatgaaattcTTCAAGAGCTCTGATTGTTACTTTCTGATTGGTTTTTAACTTGTTATATCAGTCTCTGCAGTCCTGAAGATGATTCTATAGTTTTTCTtggtctgtctgtttttcttttcttttcctagCTTTCTGCAGTTTCTCTATGTCCTTGTTTAAACTCACAGATAATCTGCTGTGCtgtagcatttgtttaatttgtgttcatcTTTAGGTTTCTATTAAAAAAGGtttgatagtgtgtgtgtaacatgACAATGCAAAGATGAGAAATACAACTGTTACAAAagcctttttaaatgtcacGGACTTGGCAttaaatttctttaaaaaaatatagagagagattGGTGTATCTGTACAGATATGTGCAGCCATAAATTTAAAGCTGTCCTTCACTTAGCTGTCCTTAAGTAGCAGATCTGACATGTTTGAAGTGTAAAATTGTGTAAAACCTCTTGGCCTCAAGGCAAACATGAGTTATACTGCAAAAAGAAGCCTAAAGGATATGTG

Function

GO: NA

KEGG:

id description
K23711 STAC; SH3 and cysteine-rich domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002453 True 3254 mRNA 0.44 11 14976106 15005344

Neighbor

gene id symbol gene type direction distance location
AMCG00002452 LOC104940895 coding downstream 55601 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 126332 14795087 ~ 14849774 (-)
AMCG00002447 NA coding downstream 188158 14761837 ~ 14787948 (-)
AMCG00002448 NA coding downstream 244979 14696398 ~ 14731127 (-)
AMCG00002445 fignl1 coding downstream 293677 14680384 ~ 14682429 (-)
AMCG00002454 NA coding upstream 55503 15060847 ~ 15111866 (-)
AMCG00002455 LOC102778215 coding upstream 332743 15338087 ~ 15362568 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 503104 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 601697 15607041 ~ 15616265 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding upstream 620854 15626198 ~ 15630089 (-)
G123204 NA non-coding downstream 283107 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 381564 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 387348 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 409039 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 433086 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 475800 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 682111 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 717589 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 785261 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1118938 16124282 ~ 16127405 (-)
G123263 NA other downstream 29795 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1321859 13649227 ~ 13654247 (-)
G122862 NA other downstream 1946700 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2969754 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3103244 11869607 ~ 11872862 (-)
G123585 NA other upstream 1830812 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1952818 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2684664 17690008 ~ 17706289 (-)
G123829 NA other upstream 2917108 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2928120 17933464 ~ 18041573 (-)

Expression


Co-expression Network