AMCG00002454


Basic Information

Item Value
gene id AMCG00002454
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15060847 ~ 15111866 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002454
ATGTCTGAACAGGACAAAGTGAGCCAGGAGGCAGCGCAGGAGACCCCGGAGAGGGGCGGCGGGGGCGGTGAGCAAGACAGAGAGGTTTGCCCTCCCTCCCCGAAGCAGCGGGTCACTAAAGCCCAAagcctggaggaggaggagaatgaCAAGGACGAGAGACAGGTCGACGCCAAGGAGGAGAGACAGAAGCGAGGGGTAAACCAGggacaacagaaaaaaagaccCAAGacgGGAGCAAAAGGTAAACTGGTACGCAGTCTTGCTGTGTGTGACGAGTCTTCCCTGCCTGGTTCAATTCAACTGCAAATTACCAACTTGCCTAGCTTTCAGGAAGATAGCAAACCGAGTAAAGATGAATTGGACAAGGACCGTGAAAAGGATAAGAACAAAGAGAAAGACAAATCAAACGAAAAACCAAAAATCAGAATGCTATCAAAAGATCACAGCCAGGAATACACAGACTCCACTGGCATTGACTTGCACGAATTCTTAGTAAATACCTTAAAGAACAACCCCAGGGACAGGATGATGCTGCTGAAAATGGAGCAAGAGATCATCGATTTTATTGCTGACAATAAcATACATTATAAGAAGTTTCCCCAGATGTCCTCGTATCACAGGATGCTGGTACACAGGGTAGCAGCCTATTTCGGGATGGATCATAATGTGGATCAGACAGGAAAATCTGTTATcatcaataaaacaagcaatACAAGAATACCCGAGCAACGGTTTGGCGAGCACATAAAAGATGACAAGAGCGAGGACTCGCAGAAGAGATTTATCTTGAAACGAGACAACTCCAGCATCGATAGGGAGGACAATCAGTCCATTTGTTCCCAGGAAAACATTTATATGGAAACtagGGGAAACTGGGACAGTACTGGAAAGGCATCCGGAAGCCgacagagcagcacagagacgGACATTAGATGGAGTGACCAGCGGCCGTGGAGCAGCACGGATTCGGACAGCTCCAACCGCAACCTGAAGCCAGCGGTGACGAAGACGGCCAGCATCGGAGGGATTACAGTCCTGACACGAGGGGACAGCTCTGCCAGCAGCAGGAGCTCGGGCAAGCTCTCCAAAACAGGCTCAGAGTCTTCCAGCAGTGGCGGCTCGTCTGGATCTCTCTCCCGGGCTCACCTATCACTTCAGAGCACCACACTCCTGCCCTCGGCTGTGGTCAACTCCACCGGATCAGTCCCCTTCCCCGACAGCGGCTCCCTCCCTGGGCAGGGGcctcccagcagccccagctACATCCTGGTATCTTTAGAGGCCACAGGCATTCCACCAGGAAGTATTCTCCTGAACCCCCACACAGgTCAACCATTTGTAAATCCTGATGGCACACCTGCAATCTACAACCCACCCAGTGGACAGCAGTCAATCAGGAGCCAGCTAGTGGGACAGTCTCAAGCACCGAATGCACCTGCATCCCAGCAGCCAGCCCAGCAGCAGCCCACCCCGCAGCAGCCACAGCAGCCAATGGCAGGCCACATGGTCCCCCAGCGGGATGATATGGCATCTCAGTTCAGCCAGATGAGTCTCAGTCGACAGTCTTCAGGAGAAGCTCCTGAGCCGCCTCCTTCTGGCTCTGTCTACCCCGCTCCCATCCTCTCGCAGCCCCCCCAGCAGCCGAGCTACGTCATGGCTTCCCCAAGTCAACAGCTGCCACCGGGGGGGTTCACCAGCTCAGGGCCCCCCCTGTCCCAGCCAATGccagtgtattattattcatctgGTCAATACCCTACCTCAGCAAGTCAGCAGTACAGGCCAGTGGCCCCTGTTCAGTACAATGCACAGAGAAATCAGCAAATACCACAGAACAGCCAACAAACAGGTTATCAACCTGTTCTGTCCAATCAGCAACAAGGGTTCCAGGGCCTCATTGGGATGCAGCAGCCACCACAGAACCAGAACTTGATGTCCAGTCAGCAAGGGAATCAAGTCCCAAGCATGATGGTCCAGTACTCATCTATGTCTTCTTATCAGGGTGGGCAGAATGGGACGGGCAAAAGTGCGGGCTTGTGA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002454 True 2043 mRNA 0.53 16 15060847 15111866

Neighbor

gene id symbol gene type direction distance location
AMCG00002453 NA coding downstream 55503 14976106 ~ 15005344 (-)
AMCG00002452 LOC104940895 coding downstream 140342 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 211073 14795087 ~ 14849774 (-)
AMCG00002447 NA coding downstream 272899 14761837 ~ 14787948 (-)
AMCG00002448 NA coding downstream 329720 14696398 ~ 14731127 (-)
AMCG00002455 LOC102778215 coding upstream 226221 15338087 ~ 15362568 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 396582 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 495175 15607041 ~ 15616265 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding upstream 514332 15626198 ~ 15630089 (-)
AMCG00002470 NA coding upstream 711363 15823229 ~ 15837658 (-)
G123204 NA non-coding downstream 367848 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 466305 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 472089 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 493780 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 517827 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 369278 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 575589 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 611067 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 678739 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1012416 16124282 ~ 16127405 (-)
G123263 NA other downstream 114536 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1406600 13649227 ~ 13654247 (-)
G122862 NA other downstream 2031441 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3054495 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3187985 11869607 ~ 11872862 (-)
G123585 NA other upstream 1724290 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1846296 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2578142 17690008 ~ 17706289 (-)
G123829 NA other upstream 2810586 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2821598 17933464 ~ 18041573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000206_00385497_00393583 R3HDM1 coding CI01000206 null 385497 ~ 393583 (+)