AMCG00002460 (fbxl2,LOC107742856,LOC107706183,LOC107696556)


Basic Information

Item Value
gene id AMCG00002460
gene name fbxl2,LOC107742856,LOC107706183,LOC107696556
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15508448 ~ 15534012 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002460
ATGAGGAGAGGATTTAAaatatTCTCCTATCTGGATGTGGTTACACTGTGTCGGTGTGCCCAGGTATCCAAGGCCTGGAATGTCTTAGCATTAGATGGAAGCAATTGGCAAAAAATAGACCTGTTTAACTTCCAGACCGATATAGAGGGCCGTGTGGTGGAGAACATCTCCAAACGCTGTGGGGGCTTCCTGCGCCAGCTCAGCCTGCGGGGCTGCCTCAGTGTGGGGGATGCCTCCATGAAaacttttgcacagaactgcagaaacaTCGAACACCTTAACCTTAATGGTTGCACAAAAATCACTGACAGCACATGTATTAGCCTTAGCAAATTCTGTTCTAAACTGAAACATTTGGACTTGACATCCTGTGTGTCTATAACAAACAATTCTTTAAAGGCATTAAGTGAGGGCTGCAGGACTCTAGAGAACCTGAACATTTCGTGGTGTGATCAGATCACTAAGGACGGCATCGAGGCTCTGGTGCGAGGATGCGGGAGTCTCAAGGCCCTGTTCCTCAGAGGCTGCACACAGCAGGTAACAGACGACGGTTTAGTCAGTCTATGTAGAGGATGCCATAAACTTCAAATCCTGTGCATCTCTGGCTGTGCGAACATCACAGACGCCTCCCTCACAGCCCTGGGCCTCAACTGTCCCAAGCTGAAAATCCTGGAGGCTGCAAGGTGTTCCCATGTGACCGACGCCGGCTTCACCGTTTTAGCTAGGAATTGTCACGAACTGGAGAAGATGGATTTAGAAGAATGTATTTTGGTTACAGATAACACACTGGTTCAGCTCTCCATTCATTGTCCTCAGCTGCAAGCTCTGAGCCTGTCCCACTGTGAGCTCATCACGGACGACGGGATCCGGCACCTCAGCAACAGCACCTGCGGTCACGAGTGGCTGCAGGTGGTGGAGCTGGATAACTGCCCCCTCATCACCGACGTCACGCTCGAGCACCTCAAGAGCTGCCACAACCTGGAGCGCATCGAGCTGTACGACTGCCAGCAGGTCACGCGGGCTGGCATCAAGCGGATCCGGGCACACTTGCCAGAGATCAAAGTGCACGCCTACTTCGCCCCCGTCACACCCCCGCCCTCAGTGCACGGCGGGGGCCAGCGGCTCTGCAGGTGCTGCATAATTCTTTGACAGCGGCAGGCTGAGGGGGCAGCTCTGTGTGCCGTACTGTTAGTGTGAATGATGACTCCAGCGCTGGCGATGATCTCGAGCCCTCCTGCCTGCGGGGAGAGAGCTGGGAGGAGGGGGCAGCATGggggaggaggatgaggaagaggagagagaccTTGCGGAGGAATGACGATGCCGGCTGGACGCCTTTCTCTCGAGCTCACGtccccacccaccccaccccgtGTGCTGAGGAAGGCAGGGGGGGTCGCAGCAGCCAGTGAATGAGGAAATATGAACCTTCTgcttaacaagaaaacaaaacgaCGACTACAGCGACAGCACATTTCCTTGTGGAATATCGGCCAATGCTTCCATTTCAATGAGTTTGTTCTTTCAGTCCAAGTACCcttgtgttgttgtgctttttACGGTAATGTAACAGTGGTATCAGGGTAGCAGCAGAGTGCTGAACTTTATGGTGAAGCAGTTTGTAACGTGAAGCATTTGACTTGTGTTGGTGAATCGGTGGGGTGTTCTGGGAGCCGGGGGCCAGGGTGGCTTCGTGATGGAAGCGCTGCGGAGGAAGGCTCTTTGCTCGCTGCGTTTTCTTtcttgtggggaaaaaatgagGTGAGgggatttagttttttctcatgATTGTGTTTAACAAGGACACCTGGAGTAATTCAAAGCTGAATATAATTGTGTGCATCCACGAGCTATCCGTTTTTCACaaggatatgttttttttttggttttgtttttgtttttttgcattggcaaaaaaacaaaaagtgacaaAATGGCAAATTGTCTTTGTATTCAAATTGGAGTTCAGTGATATTTCTTTATGCattcagttttgtcagtgcTAATTGTTATTGTCCAAGCTTTGCTTTTctgggggtaaaaaaaaaaaaaaaaaaattacagcatGTTAACTTTGAATGAAACCTCCCCTTTGGAAAAGGCTGGACATTCCAACGCAGTGACTGATGTCGCTTTCAAACTCTTATCCGATTAACTTGTTTCGTGACACAAAAAAAGAAGTAAATTTGCCTGCAACTGTTAAgatattttaagaattaaaaGCATACTTCGGAATCTACTCAGAGCAGTAgcatatatgaatatttttatatattttttttatattcactcAAATGCAGCAGCGCTACAATGCGTCATGTTACGGATCGGTCCAAAAGAGAGACCGGACCGGCAGTAACCTCACCAACACGCAGAACAATTGTTTCTGGGCCGTAAAGTAACATTTGTGCAAGCCTCGGACAGGTTCCTCTCCCGTGTTGGTATTTACGGAAATCCTGAGAAACGCAGAGGCGGATGTAAAGTAGGAGGCTGTCTGAGAAACCTCACTGTGCTCCGGCACCAAACCACTCTCCTGCACCTACAGTGAGGAGCTGCGgctaaattattttgtgtgtgtgcaggtcgTTTCTGGAGGTAGAAACAACTTTAGTTTTCCTAAATTATTGCTTACAGTAGAGTAATTAGGGTTTTACCCTCTGTGTTGTCAGTTCATTGTTCTTCCAAAGATATGTGaggatttattgttttttttttctttatattttcctcaagtatatattttaaagtgttgttgAGCGCAGACAATGAGCTGAAACAGATGATGGGCAAGCCTGGGTTCTTACCTGGCCACCTCGagtgtttaatttatatgtgtTGCTGCTatgctgaagaaaaacaaaatcatttttaaagctttgtgCAGCTCATGACAACTGAAACCATAATCCTTTGAAATATGCCTTACTTAAATTGCaaagtaattataaaatgtgtatttgtgatTGCACTTGCTCTGTCCAAGGACTAGTTTTGTATCCTCTGGCTCTTTGCTGTTGGAATTCTGCACACTGGATTAGCAATGGGCTACAGTTTGTTTTCCCCCATGTTGCTGGTGGTCATTTTAAGTTTCAGCCAATCCTACTCCTATAAATAAGtggttacattaaaaatgtgtagtAATAGTTAGACACGGGCCATTGCAGCACAGCATCAATCTCTGGAGGAGAGGAAATGAGGGGCTGTGGCTGTTCTAGGGTTGTGTGGAATGGTGGGATAAGATCTAAATATGCCCCTACAATCCATACAGAATTATTCACATTACCTGAACATGTATTActggtatttaaatgtaaagggaTGCGTTGTGGGTGGGGTGTTGGGTGGTCCGTGGGCCAAACAAAAGTAAGAGAAACCCTGCTTTAGATGTTTAGTTAGGATGTCTTTTGGGAGTCCAGGAACTATGCATTATGATGCCAAGAGTTCAAATTCAGGAGTAGATAAAATTGATTACCTTTAATTTGCCCTTGTTTGAGAAGTCCTCATTCACCAAAGTAGGAATTTAAGTCACCtatgaatgtaaaatgattTTACCATGTATTAATCATGTTGCAAAAGCCAGAAATAATGTTCCTACAATTTGGCACGATTTCCTCTCCCGCATCACAATCGTAAACCCTCAGATGATCTGGTTTACGCCCCCCGGTCAGGTCACAGTGTAACCGCTGTGGGTCAGTGAGGCAGGCTGACGGGCCCATTTCTAACAGTGGTGGCAGAATTTCAAGTCTTAATGACGGGTGGACCAGGCTGTCCCAGGCACAATCATGGGACATTTGAGGTCAATGTCTGCTTGAACCTGAAGTTTTGGTTTGTAAGTgaagcactgtatttttgatttttgcTTTCCCCCCCGAAGAGTTCCTGTCCCAAGATTTGTACTGAATGAAATCCACAAATGTACACCAATGATACTGATGCTTACCGAGTATTAACAGTGCATTTTGCTCCTGGTCATCAATACTAATGGTCTCTCGAAGACAACCgaattaacataatttatatatatataaataaataaaataaaaagggtaaCCGATAGTCAAATTGTTCTGGCTGTTAGTACAATAGAAgttaatcaaataaacaatatcacATGTTGTATTTGATCTCTTTGACGGGTGAGTTGTATGGTGCCTTGTGTACAAAAAcagcatttctttgtttttttgcacccacatttaaaaatgaccggaacattaaaatgtaaaaagtttcTACATGTATGATTACATCCCTGGACTCCTTTGCATAGTATTTTTTCTAGGATGTAGATTAAAACGACTTACAAATGTCCTAATACCTGCTGAACTACACCAGTGGCAG

Function

symbol description
fbxl2 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in pronephric duct. Orthologous to human FBXL2 (F-box and leucine rich repeat protein 2).

NR:

description
PREDICTED: F-box/LRR-repeat protein 2-like

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002460 True 4341 mRNA 0.45 13 15508448 15534012

Neighbor

gene id symbol gene type direction distance location
AMCG00002455 LOC102778215 coding downstream 145880 15338087 ~ 15362568 (-)
AMCG00002454 NA coding downstream 396582 15060847 ~ 15111866 (-)
AMCG00002453 NA coding downstream 503104 14976106 ~ 15005344 (-)
AMCG00002452 LOC104940895 coding downstream 587943 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 658674 14795087 ~ 14849774 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 73029 15607041 ~ 15616265 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding upstream 92186 15626198 ~ 15630089 (-)
AMCG00002470 NA coding upstream 289217 15823229 ~ 15837658 (-)
AMCG00002472 NA coding upstream 304867 15838879 ~ 15923127 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding upstream 408094 15942106 ~ 15950022 (-)
G123346 NA non-coding downstream 24732 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 815449 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 913906 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 919690 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 941381 14566247 ~ 14567067 (-)
G123385 NA non-coding upstream 153443 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 188921 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 256593 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 590270 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 946017 16480029 ~ 16480293 (-)
G123263 NA other downstream 562137 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1854201 13649227 ~ 13654247 (-)
G122862 NA other downstream 2479042 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3502096 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3635586 11869607 ~ 11872862 (-)
G123585 NA other upstream 1302144 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1424150 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2155996 17690008 ~ 17706289 (-)
G123829 NA other upstream 2388440 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2399452 17933464 ~ 18041573 (-)

Expression


Co-expression Network