AMCG00002464 (LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731)


Basic Information

Item Value
gene id AMCG00002464
gene name LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15626198 ~ 15630089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002464
ATGTCCCAGACCTGCTCTCTGATGCCGGAGTTTGAGAAGAGCACCGTCCACATTAAGGACCCAGAGAGAGTGGAGGAGATAATATGCAGCCTTATCAAAGGAGGAGCCGCCAAGCTACAGATTATTACTGATTTTGACATGACGTTAAGCCGGTTTTCTAACAATGGCAAAAGATGCCCCACGTGTCACAATATTATCGATAACTGCAAACTGGTCACCGAAGAGTGCCGAAAGAAGCTGCTGCAACTGAAAGAGACCTACTACCCAATCGAAATAGACCCGAACCTCACCATTGAAGAGAAGTTCCCTTTCATGGTGGAATGGTATTTCAAGTCCCACACTTTACTAATCGAACAACGATTACAAAAAGACAAGTTGCCGGAGGTCGTGCGGGAATCGGATGTCTGTCTTAGGGAGGGGTACGAACAGTTCTTCGACAAGCTGCAGGAGCACAGCGTGCCCATGTTCATCTTCTCGGCCGGCCTGGGGGACGTGCTGGAAGAGATCATCCGCCAGGCCGGGGTCTATCACCCCAACGTCAAGGTCGTCTCCAACTTCATGGACTTCGACGACAAAGGAGTGCTGAAAGGGTTCAAAGGAGAGTTGATCCACGTGTATAACAAGCACGATGGTGCGCTGAAGAACACAGAGTACTTCAAGCAGCTCAAAGACAACTGCAACATCATCTTGCTGGGCGACTCCATGGGGGACCTGAACATGGCAGATGGAGTGTCCAACGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGATGAGCGCTTGGAGAAATACCTGGACTCTTACGATATTGTTTTAGTGAAGGATGAAACTATGGAAGTGCCCAATTCCATCCTTCAGAAGATACTTTAA

Function

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 3 isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002464 True 879 mRNA 0.49 9 15626198 15630089

Neighbor

gene id symbol gene type direction distance location
AMCG00002463 crtap,LOC106588754,LOC103394375 coding downstream 9933 15607041 ~ 15616265 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding downstream 92186 15508448 ~ 15534012 (-)
AMCG00002455 LOC102778215 coding downstream 263630 15338087 ~ 15362568 (-)
AMCG00002454 NA coding downstream 514332 15060847 ~ 15111866 (-)
AMCG00002453 NA coding downstream 620854 14976106 ~ 15005344 (-)
AMCG00002470 NA coding upstream 193140 15823229 ~ 15837658 (-)
AMCG00002472 NA coding upstream 208790 15838879 ~ 15923127 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding upstream 312017 15942106 ~ 15950022 (-)
AMCG00002474 NA coding upstream 321144 15951233 ~ 15989035 (-)
AMCG00002475 eomes,LOC105012780 coding upstream 408312 16038401 ~ 16045090 (-)
G123346 NA non-coding downstream 142482 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 933199 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 1031656 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 1037440 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 1059131 14566247 ~ 14567067 (-)
G123385 NA non-coding upstream 57366 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 92844 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 160516 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 494193 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 849940 16480029 ~ 16480293 (-)
G123263 NA other downstream 679887 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1971951 13649227 ~ 13654247 (-)
G122862 NA other downstream 2596792 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3619846 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3753336 11869607 ~ 11872862 (-)
G123585 NA other upstream 1206067 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1328073 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2059919 17690008 ~ 17706289 (-)
G123829 NA other upstream 2292363 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2303375 17933464 ~ 18041573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location