AMCG00002470


Basic Information

Item Value
gene id AMCG00002470
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15823229 ~ 15837658 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002470
ATGGCGGTAAAAACAAGAAGGCAGAACTGCAGGGAACAGCATGCCCAGGCGAGCCCAGCCGACAGAGAGAGAAGTTCGCGTGTGTCGCCGGCGCACGGCGGCAGCGGCGGCGGGGGTAAAGCTCCGGGCAGACGGCCGGGGAGGGAAGCCAAGCCCGCCTCCTGCAACAGCGCACAACTACACAAAAACAGACTGCTTTCCGTCCCCGCTAGCATCAGACATCATCTGGGCCTGAGTCTGCCCGCTTGCATAAGGATAGGCATCACCCTGGCTTTGGCTGCTGTGGCTGGCATTTTACACTGGTACCATGTTTCAAATCTCTTTGAGAATGATCGCCATTTTTCACATCTTTCTACCTTGGAAAAGGAGATGGCTTTCCGTACAGAAATGGGTCTTTACTATTCCTACTTCAAGACTATTATTGAAGCGCCTTCCTTCCTAAACGGTCTCTCTTCGATAATGAACGACAGACTCACAGAGTATCCTCTTGTTATAAACACCCTGAAGAGGTTCAATCTATACCCAGAGGTGGTCCTGGCCAGCTGGTACAGGGTTTACACCAGTACAATGGATTTCTTTGGCATTGCGACTAAGATGTGCTGGTCTGTCAACAGGGGAGAAGGACTGAATCCTGTTGAAAGTTGTGAAGGCCTTGGAGATCCTGCTTACTTTtatgttacatttgtttttatactgaATGGGATAATGCTcagcttgtttttcctttatggGACCTATTTAAGTGGAAGTAGACTTGGTGGTATTGTCACAGtcctgtgtttcttttttaatcatgGAGAGAGTACGCGGGTCATGTGGACGCCTCCTCTGCGCGAGAGCTTCTCCTACCCATTCCTggtcctgcagctgctgcttctTACTCACATCCTCAGGTTTTGCCCAGTTCGTattgCATCCTTATTTGCATCTTACATCATGGGGTATCTGGCTGCTGCCAAGCTGCAGACACTCTTACTTACCCAcatgATTTCACTTTTGGCTTGTTTCGTTTTAATGTTCGGAAATGCCATGCTTTTGACGTCTTTCTATGCCTCTTCGCTGGTATCAATTTGGGCCCACATAAGCAGTTTGATCAAAtccaagtttaccagctacaagGATTTTGATACCATGATGTACACCTGTGCAGCGGAGTTTGACTTCATTGAGAAGGAGACTCCTCTGCGTTACATGAAAACACTGCTGCTCCCAGTAAATCTTCTCATCTTTGCTGCGATTGCTTCAAGTCTGGTTTACCACATTTTGCAGCTAATTGCATTCACGGTACTAGCGGTCCTAATTATGAGATTAAAGCTTTTCCTCACGCCTCACATGTGCATAATGGCCTCGTTAATCTGCTCGAGACAGCTCTTTGGCTGGATAAAGCAGAAATACAAGCAGCAGCTTCTGGTCTTTGGGATCCTCTCCCTCATGGCCATTCAAGGGTTGGCCAATGTGCAAAACCAGTGGAGCATCATGGGAGAGTTCAGTAACCTGCCGCAGGAGGAGGTGATCGAGTGGATCAAGGAGAACACCAGGCCTGATGCTGTATTTGCTGGAGCCATGCCCACAATGGCCAGTGTCAAGTTATCCGCCAACAGGCCTATTGTAAACCATCCGCATTATGAAGACGCCGGGCTCAGGGAAAGGACAAAACTGGTGTATGCCATGTACAGCCGCAAACCAGCAGAACAGGTGAAGTCTAATTTAGTCCGGCTCGGAGTGGACTACTTTATACTGGAAGACTCGTGGTGCACAAGGCGGTCCAGgccTGGCTGTAGCATGCCTGAGATCTGGGATGTTGAGGACCCCGAGCATGCTGGGAAAATTCCTCTCTGCACCATACTGGGCAGGGATTCCAGGCCTCACTTTACCACCCTGttccaaaataacatttataaagtCCTCAAGGTTTCCAAAACTGCCAAAGATAGGCTTTAG

Function

GO: NA

KEGG:

id description
K24553 DPY19L; C-mannosyltransferase DPY19L

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002470 True 1941 mRNA 0.49 19 15823229 15837658

Neighbor

gene id symbol gene type direction distance location
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding downstream 193140 15626198 ~ 15630089 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding downstream 206964 15607041 ~ 15616265 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding downstream 289217 15508448 ~ 15534012 (-)
AMCG00002455 LOC102778215 coding downstream 460661 15338087 ~ 15362568 (-)
AMCG00002454 NA coding downstream 711363 15060847 ~ 15111866 (-)
AMCG00002472 NA coding upstream 1221 15838879 ~ 15923127 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding upstream 104448 15942106 ~ 15950022 (-)
AMCG00002474 NA coding upstream 113575 15951233 ~ 15989035 (-)
AMCG00002475 eomes,LOC105012780 coding upstream 200743 16038401 ~ 16045090 (-)
AMCG00002477 NA coding upstream 291782 16129440 ~ 16154565 (-)
G123405 NA non-coding downstream 28057 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 100092 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 133888 15687455 ~ 15689341 (-)
G123346 NA non-coding downstream 339513 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 1130230 14691970 ~ 14692999 (-)
G123452 NA non-coding upstream 286624 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 642371 16480029 ~ 16480293 (-)
G123489 NA non-coding upstream 643910 16481568 ~ 16483051 (-)
G123524 stt3b,LOC108412618 non-coding upstream 810749 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 815841 16653499 ~ 16654863 (-)
G123263 NA other downstream 876918 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2168982 13649227 ~ 13654247 (-)
G122862 NA other downstream 2793823 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3816877 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3950367 11869607 ~ 11872862 (-)
G123585 NA other upstream 998498 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1120504 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1852350 17690008 ~ 17706289 (-)
G123829 NA other upstream 2084794 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2095806 17933464 ~ 18041573 (-)

Expression


Co-expression Network