AMCG00002473 (LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906)


Basic Information

Item Value
gene id AMCG00002473
gene name LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15942106 ~ 15950022 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002473
CCGCTGTGACACCCGACTCCATCTTAGACGACAACAAGAGTGAGGGAGAGCTGGCTTTCACTGCAATTCAGCGGACATAACATGGACATAACCCCGCTATAGTGAACCCGGGCGTGTCATGTGAACGCCACCCGGTCGCACAGGAGACCGTGTTCCTCCTCTCGAGAAGATCGGTGTCATTATTATGAAACATGGACCGTGGTGCAGTTGACAGTCCAGTGACCTTAGTCATCAAGGCCCCTAACCAAAAATACGATGACCAGACTATAAACTGTTTTTTGAACTGGACTGTGGAAAAACTCAAATCTCACCTTTCAAACGTGTATCCAAGCAAACCGtcTTCAAAGGATCAAAGGCTAGTGTATTCTGGAAGGCTGCTGCCAGACCACCTGCAGTTGAGGGATGTCCTCAGAAAGCAAGACGAGTATCACATGGTTCACTTGGTGTGTGCCTCCCGGAGCCCCCCTGGATCTCCACAACCCAGTAACAGCAGCCTAGACACGCCAGCCTCTCCCAACTCTTCACGTTCAGCCAGCTCAGGAGCCTCTTCCCCAGCTACCGCCCCCAGCCCAGAGTCCCTGGCAGCCTCCACAAGTGCGAGCTCTGAGGGGCTGCGGCATCGTGGCAGTGCCctgcagccccccagccccGACCAAAGCCATGCAGCTCCCAATTTTATGCAAGGaCCCCTGGGAAACCAGCTCCCTGTTCAGCACGGCCTACCTGCAGGTTTCCCCATGTATCCCATGTACAACCCCGTGCAGGTCCTGTGGTGGCAGCAGATGTATGCCCGGCATTACTACATGCAGTATCGCGCGGCCGCAGCCTCCTCTCAGGGACCCAGTCCCGTGCTGCCAGCAGTACCTAGCGTCTCCCAGTCGGCCGAGGCGCCCCCGCAGAACGAGCCACCTGTGGTTCCCAACCCCGCTGTGCCCGAGGACCGGCCTGCCAACCAGAACATCCAGATGAATGCCCAGGGTGGGGCCGTCATCAACGAGGACGACCTGAACCGCGACTGGCTGGACTGGATCTACACCTTCTCACGCGCCGCCATCCTGCTCAGCATCGTGTACTTCTACTCCTCCTTCAGCCGCTTCGTCATGGTCATGGGCGCCATGCTGCTAGTCTACCTACATCAAGCTGGCTGGTTTCCTTTCCGCGCGGACCTCCAGAACCCGGGAGAAGAAGGCAACCCACAGGAACAGGAGGCGGAACACAACCCAGACATTCAGGAAATGGAGCGCATCATGGACGAGGGGCTGGACGAGGACGCGGGAGACAGCGGCGACGACGCACCCGAGGACCATGGCACGGCCCCCCACCCCAGCTTCCTGTCCTCCGCCCGGTCCTTCATCACCACCTTCTTCACCTCGCTCATCCCCGAGGGTCCCCCCCATGCCGCCAACTAGACTCCGTACCACCGCGCCGCTCCGCCACTGTACATAACGCTTCATTAAAACCCAGACTGATGAAACTGAGGCGTGGTCGTGTGGATTGTCAACACAAACAGGGCCGCTACTCCTATCTGtgaaggactttttttttttttttaaatatgaggGGGGCGTCCCAGCAACTGAGAAATCCTTGTAACTTGTCTTCcatttggaaatgtaaaaagGCAGTCATCCATTTTTCTTCTAGAGGGAAGGCCGAGGGTGGGGGTGGCGGGGAATCATGTGcggttaacaaaataaaacccctGCCCATtccaatatatatgtatactgatAGATTTTCTCTTGGAGGAGAGAAGCACTTTGAATAAATTTGAGATTCCCTTTTTATACAAGGTGTGAGCAGTTTATTAACAGAGATGAAGAAGTCTTCTCAGTTCATCATCTTCGAGTGCTGCAGTGGACGTTGATGTCTGTGGCGGGCCTTGATCACATGTTTTGTAAGCTACAGTGAGCacatttgtaaatacacatgGTTCATGAAGAGAGAGCCAGGTCCTGCCGGGTACTGGGCAAGCGTTGCAACGCCAGACTTCCATGCCACCTGGGGAGATAACATTGCCTATATAAAACTGGATCATGCCTACAGAGCCACATTTAAATAGCCtttatcttttttaatctttatacGTGCAATTGAATTGATTGGAGCTATTGGCAGTCAGTGGTttctttttaagtgtttttttttttttttt

Function

NR:

description
PREDICTED: homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002473 True 2155 mRNA 0.53 9 15942106 15950022

Neighbor

gene id symbol gene type direction distance location
AMCG00002472 NA coding downstream 18979 15838879 ~ 15923127 (-)
AMCG00002470 NA coding downstream 104448 15823229 ~ 15837658 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding downstream 312017 15626198 ~ 15630089 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding downstream 325841 15607041 ~ 15616265 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding downstream 408094 15508448 ~ 15534012 (-)
AMCG00002474 NA coding upstream 1211 15951233 ~ 15989035 (-)
AMCG00002475 eomes,LOC105012780 coding upstream 88379 16038401 ~ 16045090 (-)
AMCG00002477 NA coding upstream 179418 16129440 ~ 16154565 (-)
AMCG00002481 NA coding upstream 618314 16568336 ~ 16582900 (-)
AMCG00002487 NA coding upstream 708876 16658898 ~ 16672579 (-)
G123405 NA non-coding downstream 146934 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 218969 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 252765 15687455 ~ 15689341 (-)
G123346 NA non-coding downstream 458390 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 1249107 14691970 ~ 14692999 (-)
G123452 NA non-coding upstream 174260 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 530007 16480029 ~ 16480293 (-)
G123489 NA non-coding upstream 531546 16481568 ~ 16483051 (-)
G123524 stt3b,LOC108412618 non-coding upstream 698385 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 703477 16653499 ~ 16654863 (-)
G123263 NA other downstream 995795 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2287859 13649227 ~ 13654247 (-)
G122862 NA other downstream 2912700 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3935754 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4069244 11869607 ~ 11872862 (-)
G123585 NA other upstream 886134 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1008140 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1739986 17690008 ~ 17706289 (-)
G123829 NA other upstream 1972430 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1983442 17933464 ~ 18041573 (-)

Expression


Co-expression Network