AMCG00002477


Basic Information

Item Value
gene id AMCG00002477
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16129440 ~ 16154565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002477
ATGGAGTCATATGAGTGTGCTTTGGAGGAAGCCATGAAACTTCAGCCTCTTAAGTGTGAAGACAGACTCGAGATGTGCCACTTTAAAGTTCTGGAAAGTATCATGGAGTGTCTGGCGGTAGACGATGACATTTGCATCCTCAAGCATGAGACGGCTGACAGCGTGCTGCAGCAATCGCAGGAGAGCCCTGTTTCAGTCAGTTCAGGGGATGAGTCCGTCGCCTCTCACTTTGCACTTGTCACCGCTTATGAAGACATCAAAAAACGACTGAAGGAGGCTGAGAAAGAAAACTTGTTTTTGAGGAAGAGAGTCAAGCAACTGGAAGATAAGttAATTAAGCCAGATGAAATATCCTCAGATGGACCCAAGTATGTAAATAAAGCATTCAGCGCCTATCGTGGAATCTACATAGAAAAGAATGACCTTCAGCTGGAGCTGGATAAAGTGaaaaaagagaagacTGAGTCTGAAAAACTCTTGACTGAACAACTGCAAGCCAAGGAGTTGGAGGTTCTGCAGCTCAGAACCGAGTTGGAAACAAGCCAAGTGATGAAATCCATGAACCAATCCCAGGATTTTTGGGATGTTTATAAAGTGAACCACGAACTGAAGATACACACTCTACAGCAGCAACTAGATATAATAAAGGTGCAATATAGCAGACTGCAAGAAAAATGCAAGGCAAGACCTATTGaattcttaGACCAGCCTGGAAATGATCTGTCCAACACTGAAGAGAAGCAGGAATGTCGggATGTTGCTCTGCTGAAGACATACACGGACCTGAGAAGAGAGATGTCTAATTTATATGCAGTGACTAAGTTGCAAGCCGAGATGGTGAGAAAACTGAGAGACAACTCGCAAGGTGCAGCCAGCAGAGTCTCTGCCACAGTTCCAGTCCAGTGCTTAGAAGACGTTGAAAAAGTGAAACGGACAGTGCCCTCGTTCCCTTATCCGAGCTCCCACAGCTACTCTGAAAGCCCCGCGCTGGGCTTCCCCACAGCCGCCGCCTTGAGCGACGAGGCCGGACTCCGGACCAGCCCCAGGCCGGCTCCCGTGGGCAGCTCGGCCGAGCAGCACCACGGCTCCTACGGGAAGAGCTCATTGGACGAGAACTCCTGGTCCTTCCCGAATTGTCCCAAACCAAGCACCGCCCAGTTCTGGGAAAGCACACGCAACTCCCCCAACCCGAGCGCTCCGAAGAACCCCAACACGGACTGGGTCAGACCGTACTGATgttgattttgaattttaatgatTAGTTGGAAGTGATGTAACTGTTGTAAAGGGATGCAGCTGTGTGCTACCTCTCGGTTCAATCTGCCTTAACAAGACGTCCTACACGAGGAACTTCCACAGAGGGGATCATTGGGGTTTCTGTTCAGTTATGAAGGACATGTCCGCTCCTCCGTCAAGAAGGCTCCAGAAAACCTCCATAATAAAGACTATTACTTGACAGAAAGGCTGCTCTGAAGTGAAGATGGGCTAGACTCTGTAAGACTGAGGAGGGCCGCTGATGGGAGGATTTGAGCTGAACCCAAATACACGACTTTTTTCTACTATGAGGCAGAAACCAGCACTAGTCTAGGCACTGGTATGAGAATGAGTGCTGTTCTCATCCTTCAATAAGGAGGAATACCACTAAATTAGTATTCAAGCTGCTGTatctattcattttaatcacaaaatCATTGCTAAATGGTTGTAATATAATTCTTCccatacatatatgtacatatggAGTTTCCATGATGGTTAAGTGAAgcatttgatttagttttttagtgTTGTTAATTGGGCTGCCCTGGGCCAGTTCTGGCTAAAAAGAGTCCCAAATTGATTCCCAAACCTTTCCATAACCAGTCTGCTCCCAAGTCTTTCATCCACTTAAAGCCTGAACGCAGAGCTGAGCATGGGTTATATagcctggtgttttttttattattttatttcttccataCATGCATCTGCTGTGCTTCCTTTGGGTGACTCTGTGCTAGAGTGCATAGTATCATGTAATCTTCATTTAGTCACCCttgataaaatgtaatcatatgCTGTGACTTCATACATGTCATCTGCTGTGCAATATTACAGTGGCATTGCTTCAGTAGTGTGCTTCTTTTCACCTGGAACAAGATGGCTTTTCTCGTTAGCCCGTGTTTAGCCAACACCCCATATTAAAGACGTGTCCATTGTCTGCAGAAACCGTTTACCTTATTGGCCACCCCAGAGGTCTCAGATAAACTGACATGATAGTCAGTAATAATGAAATTGTGCTTTTTAGTTTGTGTACATGTTTTATGggtgttgttgattttattttttggggggaaacaTATCCAAGAGAGTCCAATAATATAGCAAAGAATACCTATATAAGTGTCTGGTTTTAATCAGTTTAATGTAACAGTCACTGCAGGCttagtaattaaaatgtgtgtgcacACCGTTCCAACATCAGGGTACACACTTTAATTCAAATTCTATTTTATGAATCTAAGGTGGTGTTGAATTCAAACTCTAGACCACTTTAATCACAATAGTTACCAAGAGTCACTGATGTGCATTGACAACAAAAGGCCTGGTCAACCATTTGTTCCCCCAAAGGAAAGTTTTTGATCTGTCCCTGCAgttgttttgtaataaaatcaagACCTTGTGCACAATAACACCATTAACCTTGTATATCAAAGCTATGCAATATCAGGATGTGTTATATGTAGGGCCCTGTGTTTGGACTTGGCTTTTTAAACCGCAATTCAGTCATGCAATATACAGGGTCCTATTTATGCATACAGCACATTTTACAGtccatattattattcataactCTGTTTCCACcatacacaagaaaataaaatcttgtgTTTGATGTAtaaaagtacaattattttttgccACAAATGTCATTGTGCATAAAGGGCTTCATAAATGaattcacttttcttttatagccagttaaattatttgtatctaatcttgaaggagccttattttaatgttctgtgtgttgtgtgtcatgATTTAAGGCAGTTCATAAAATGCTGTATTGTACTGCACAGAGATTCAAGCCAAAAGTGAAGatacagattgtattttttgtgtttctctgtaagAGAAAGTCTACCTGTAAATACCCATGGATAGCAAATACATGACTGTGAAGTTCGGCATCAAtgggaaaaatactttttttttataatcatgtGAATGACGTTGGTAATTCTATACAGTAATGCTGATAAAAAATCTTGAACATGTGAAGAAGCTTATAGAGTTAACgtcataattgtttttaatatcacaGGATCTTTTTTAAGAAGCTGAAGCTttgaagaatacatttcaatagtTTATATGCTTTAGATGTTTAGCTTAGATATTATtccatcttttaaaaacaactgtcGACATCTTCATCATCAATAAAGAACCGGAGACCTCAAAACCCCCACAACTGAGCCAGAGCTACTCTAAGAgaatttattttccaagaaaCCCCCCCCATTGAAATGGAGAACGTGGcttttcaagtttgttttattcagcagCACATCTAAATAAGCCTGCCACCTGCCACCGAACAAACTACAGTTTTGTATCCCTCTGTCATCTCGCGCACATACTTGGGCTCGCCTGTGATTAATGGAAAAAGTATTACATGTTGGAATTTATCGTGGCCAATGAACACAGGCAGCTCAAGGGACTGCAATCTCCAGCCACAGTAATAGAAGAAAATCCCATCTGCATAAAGCATCTGCAAAGCAGCGAGGCTTTGAATCTGAGCACCAACTACCTGTGTAATAATGTGGTGCAAACAATTTCTCATTCGGCTGCAGGATCTATATTCAATTTCGCTCCAGGCaactttttctccccctccaaACTGCAgtagtttttctttgttctatGAAAACATACTGTGTATAGAGTTAAGAAAGGATGAAGGTCTTACTATGACATCTGTACCATGGAAATATATGACCCCCTGCTTTAGCTATTTAAATGAGTGTAGCGAAGTCACAAAGCTAATTACTTTCTTGTTAAGATCCACTACAGCAAACCGAAATCAGAAACATGTTCGTCGCCCATGAAGGCATGACTCAGCAGGTGGGCAACGGCACTGCCGAAATGTAGGAATGTGCCCGAACCAGGACTGGTGGCGGAGTGGGAGTGCAGAGAAGAGGACCACGGCAGATATTTTTGTTTCGAGACACAGCATGTCTCCgtgtattgtttcaaataacGAGGACACCCAATCACCTAATCCCTTTGTGATAACAGCTGAAGCACAGCGGGCGACCGACACAATGTGTTCCATTGGGTAGTCTTTCC

Function

GO: NA

KEGG:

id description
K12651 AZI2; 5-azacytidine-induced protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002477 True 4338 mRNA 0.42 8 16129440 16154565

Neighbor

gene id symbol gene type direction distance location
AMCG00002475 eomes,LOC105012780 coding downstream 84350 16038401 ~ 16045090 (-)
AMCG00002474 NA coding downstream 140405 15951233 ~ 15989035 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding downstream 179418 15942106 ~ 15950022 (-)
AMCG00002472 NA coding downstream 206313 15838879 ~ 15923127 (-)
AMCG00002470 NA coding downstream 291782 15823229 ~ 15837658 (-)
AMCG00002481 NA coding upstream 413771 16568336 ~ 16582900 (-)
AMCG00002487 NA coding upstream 504333 16658898 ~ 16672579 (-)
AMCG00002488 NA coding upstream 535271 16689836 ~ 16734523 (-)
AMCG00002486 NA coding upstream 597983 16752548 ~ 16753496 (-)
AMCG00002491 zdhhc3,LOC103144443 coding upstream 637991 16792556 ~ 16813272 (-)
G123452 NA non-coding downstream 2035 16124282 ~ 16127405 (-)
G123405 NA non-coding downstream 334268 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 406303 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 440099 15687455 ~ 15689341 (-)
G123346 NA non-coding downstream 645724 15481144 ~ 15483716 (-)
G123488 NA non-coding upstream 325464 16480029 ~ 16480293 (-)
G123489 NA non-coding upstream 327003 16481568 ~ 16483051 (-)
G123524 stt3b,LOC108412618 non-coding upstream 493842 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 498934 16653499 ~ 16654863 (-)
G123637 NA non-coding upstream 826266 16980831 ~ 16982646 (-)
G123263 NA other downstream 1183129 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2475193 13649227 ~ 13654247 (-)
G122862 NA other downstream 3100034 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4123088 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4256578 11869607 ~ 11872862 (-)
G123585 NA other upstream 681591 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 803597 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1535443 17690008 ~ 17706289 (-)
G123829 NA other upstream 1767887 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1778899 17933464 ~ 18041573 (-)

Expression


Co-expression Network