AMCG00002480


Basic Information

Item Value
gene id AMCG00002480
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16535647 ~ 16570427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002480
ATGAGTCGGCTGGGCTTTTCCGTGTTGTGGTGGACGGTGACTCTGTGCGGCAGCGGCGTCTTCCCTGCCCGGGCGGggGGGGCTGTGAACACGTTCAAGATGTCTAGACTGTGCAAGTTTTGTGATGTGGAACCGTCAATATGTGACAACACCAGCGAATGCCAAACCAACTGCTCCAGAACGGCGATATGTGAGAAGGTGGATGAAGTCTGTGTGACCATTTGGAGGAAGAATGATGAAAACATAACCACTGAGACGTTGTGTCACGACCCGGCGAAGGAATTATATGGCTTTCTGCTGGATGACTACAATTCCACACGCTGCTATATGAAAGAAAGGAAGGCTCCGGGGACACAGTTTTATATCTGCTCTTCGATGACGATGGAGAAGAATCCGAAACAAGAGACTCAAGTGTTGCCAGTCATCCTGATCAGTCTCCTGCCGCTGCTGGTCTTGGCCATTCTGGTGATCACTGTGTTCTACTGGTATCGCATATACCAGCAGAGGAAGCTGAACGAGGAGTGGGCGAGCAAGAAGCCCAAGCAGCGCAAGATGGGCCATCGCGACTGCAGCGACGCCTGCGCCATCATGATTGATGACGACGGCTCCGACAGCAGCTCCACCCACGCCAACAACCTCAACCACAACACCGAGCTGCTGCCCATCGAGCTGGACATGCAGGTGGGCAAGGGGCGCTTCGCTGAGGTGTATAAGGCCAAGCTGAAGCAGAATGCCTCGGAGCAGTTCGAGACCGTGGCCGTCAAGATCTTCCCCGATGAGGAATATGCCTCCTGGAAGAACGAGAAGGACATCTTCTCCGACATCAACCTGAAGCACGAGAACGTCCTGCACTTCCTCACTGCCGAGGAACGTAAAGTGGAGAAGCAGTACTGGCTCATCACAGCCTACCACCCCAAGGGAAACCTACAGGAGTATCTCACCAGGCACATCATCAGTTGGGAGGACCTCTGGCTCCTGGGGGGCTCTCTGGCTCGGGGAGTGGCCCACCTGCACAGTGATCACACCCCCTGTGGTCGCCCCAAGGTGCCAATTGTGCACCGGGATCTGAAGAGCTCCAACATCCTGGTGAAGAATGATCTCACCTGCTGCCTTTGTGACTTCGGCCTAGGCCTCAGGCTTGACCCCTCACTATCTGTGGATGACCTAGCCAACAGTGGACAGGTTGGGACCGCCAGATACATGGCACCTGAAGTTCTGGAATCcagaattaatttagaaaacataGAGTCTTTTAAGCAGACAGATGTGTACTCCATGGCCCTGGTGCTGTGGGAAGTCACCTCACGCTGTAACGCCATTGGTGagGTGAAAGACTACGAGCCCCCGTTCGGCTCCAAAGTGCGGGAGCACCCCTGTGTAGAGAGCATGAAGGACAATGTCCTCCGAGACAGAGGCCGTCCAGAGATCCCCAACAGCTGGATGAACCATCAGTGCTGGGACCACGATCCGGAGGCCCGGCTAACCGCCCAGTGTGTGGCCGAGCGCTTCAGTGAGATGGATCACATGGACAAACTGTCAGGCCGGAGCTGCTCCGAGGAGAAAATCCCAGAGGACTGCTCTGTGAGTGACGGGAACACCAAAGCGTCTACTTGTGGCGGTGATGGCAGCAGTTATTGCTGGAGTGAAGTCGTGTTTCAGAAGAAACTTCCACAGGCCACCATGAGCCGAGTCTCGGCCCAGGGCCTCGATCTCCTGCAGCACAAAGTCTATGTCCTCTCGGCTCACTTGGGGGCTGATGATTATGTGGCGGAAAAAGTTCACGAATCTCCGATGCGGCTGATAGCCCACCATCATCGAGCCTTTCTTCATCATCCTTTCCTTGATGACTGGCGCcacctgttaaaaataaataaatcgtgA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005026 transforming growth factor beta receptor activity, type II molecular_function

KEGG:

id description
K04388 TGFBR2; TGF-beta receptor type-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002480 True 1881 mRNA 0.55 10 16535647 16570427

Neighbor

gene id symbol gene type direction distance location
AMCG00002479 NA coding upstream 76436 16343098 ~ 16459211 (+)
AMCG00002478 rbms3,LOC106588200,LOC107713827,LOC107600516,LOC107730162 coding upstream 198928 16270456 ~ 16336719 (+)
AMCG00002476 NA coding upstream 409825 16124380 ~ 16125822 (+)
AMCG00002471 NA coding upstream 562500 15970084 ~ 15973147 (+)
AMCG00002469 tbx20,LOC107719124,LOC107686728,LOC107600539,LOC107737833 coding upstream 601213 15922805 ~ 15934434 (+)
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding downstream 51092 16621519 ~ 16651406 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding downstream 166257 16736684 ~ 16750596 (+)
AMCG00002484 NA coding downstream 183669 16754096 ~ 16769522 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding downstream 199275 16769702 ~ 16774759 (+)
AMCG00002489 NA coding downstream 209401 16779828 ~ 16790437 (+)
G123468 NA non-coding upstream 45695 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 740498 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 845684 15689601 ~ 15689963 (+)
G123295 NA non-coding upstream 1195478 15262949 ~ 15340169 (+)
G123197 NA non-coding upstream 1842871 14691981 ~ 14692776 (+)
G123525 NA non-coding downstream 81115 16651542 ~ 16651964 (+)
G123526 NA non-coding downstream 83072 16653499 ~ 16654884 (+)
G123568 NA non-coding downstream 221673 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 521548 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 566986 17137413 ~ 17141435 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2174111 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3405950 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3464815 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3483676 13031759 ~ 13051971 (+)
G122746 NA other upstream 4395182 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 387734 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 405861 16976288 ~ 16985906 (+)
G123807 NA other downstream 1345009 17915436 ~ 17984730 (+)
G123989 NA other downstream 2261587 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2503266 19073693 ~ 19127947 (+)

Expression


Co-expression Network