AMCG00002481


Basic Information

Item Value
gene id AMCG00002481
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16568336 ~ 16582900 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002481
ATTGAGAAAAGCTCATTCAACCGATGTATAGCATCTGCTCATCTCGATGCGAAGATTTGTAACCATGAATTCAATATCCAGtgACAGTAATGGCAGCAGTAGGCCAGTGAAGAAGAATGCTGTATTGGTGGATGGAGTGCATCTGAATGGACCCATCCTGGACTCCAAGGTTGGAGAGAGGTTTGTGCGGGAGGCCCTTCCACTGATCATGGAAGAGGCTGTTTTGAAAGCCACAGACGTCAATGAAAAGgtgtGTGAGTGGCAGTCCCCGGAGCAGCTGAAAGAGAAGCTGGACCTGGAGCTGCGAGACCAGGGAGAGACGCACACCCAGATCTTGGAGAGGTGCCGGGACGTCATCCGGTACAGTGTGAAAACAGGTCACCCCCGCTTCTTCAACCAGTTGTACGCTGGACTGGATCCGTACTCACTGGTGGCTCGCTTAATCACCGAGGCGATTAATCCCAGCGTCTACACGTATGAGGTGTCGCCCACATTTGTACTAATAGAGGAGGCGGTAATAAATAAGATGATCCAGTATGTTGGCTGGCAAGAGGGAGGCGATGGGATCTTCAGCCCAGGAGGCTCTGTTTCTAATATGTACGCGGTCAACGTGGCACGTTACAAGTTCTGTCCAAACATCAAAGAGGAGGGGCTGTCTGGGATGCCGAAGCTGATCCTGTTCACTTCAGAAGAGAGCCACTATTCAGTGAGCAAAGCAGCTGCCTTTCTGGGAATTGGTACCAAGAATGTTTGCACAGTACCTGCGGATGACAGGGGAAAGATGATTCCAGAAGAGCTAGAGAAACTTGTCCAACAGGCCAAGAATGAGGGCAGAGTTCCCTTCATGGTCAGTGCCACCGCCGGGACAACAGTGCTGGGAGCGTTTGACCCCCTGGAGGAAATTGCTGACATCTGTGAAAGACATGGCCTCTGGTTTCATGTTGATGCCTGCTGGGGCGGTGGAGCCTTACTGTCCAGGAAACATCGAGGTCTTCTCACTGGCATCCACAGAGCTAATTCAGTGGCCTGGAACCCCCACAAGATGCTGATGGCCGGCCTGCAGTGCTGTGCGTTTCTAGTCAAAGACCAAACAGGGCTGCTGCAGCGCTGTCACTCTGCGCAGGCTTCATAcctcttccagcaggacaagtTCTATGATATCCGCTATGACACCGGGGACAAGTCCATTCAATGCAGCCGCAAGTCCGATGCCTTCAAGTTCTGGCTGATGTGGAAGGCCATTGGCACCCAGGGGCTGGAGGAGCGGGTGAACAGGGCACTCGCATTGGCCAGGTACTTAACTGAGGAAGTCAAGAAGAGGGAAGGATTTCAGCTCCTTATGGAGCCCGAGTATGCGAATGTTTGCTTTTGGTACATCCCCCCCAGCCTGAGGAACATGCCTGAAGGGCCCGACTTCTGGAAAAGACTACGCGAGgtgGCGCCAGTCATCAAGGAAAGGATGATGAAGAAAGGCTCGATGATGGTGGGCTATCAGCCGCATCGGAGATTCGTGAACTTTTTCCGCCACATAATCATCAGCCCCCAAGTGAGCCGAGAGGACATAGACTTTGTGCTGCAGGAGATCGAGGCCCTGGGCCGAGACCTGTAACAACCACCCAGCACAGACCTGAAGACACTGCTGATCACACCAGCAATGCAGAATGTTTTAAAGACTCTTCAATTgaaaaatgaaccaaaaaacatttaatgttcaCAACCAGCTTTTGGAATTAAACCTTTGAAATTGTTCTGAAAAACCCTCTGATGTCTTAGCAGTTTAAAAAGACAGAAGAGAAAAGGATATATTCAGCTAGCAATACCTATGCAcctctaaaatatttttttttaagcatttaaaggtgtgtatatatttaaatgaaatataattacattcttTGGACCAGCCTGACTTAAAACCGGTTAAAATGAAAACGATTAAGGAATAAGATTACATACAAATTGTGTAGGTTTTGTTTGCCCTTTGAATGGCACTTATTGCCTGTCTTTAATGTCCTAAGCCTACTGTTTAGCTCTTAGTTTAATTGAGACTAAAGAactatttcactttatttacaaCTACAGACATCAATCCCACAGTTATACACCAACACGCTTGCAATGTAATGTAGGTAGGGAGTGAAGCCAGGACTTCTCTTCCCAATGGGTTGGCTGTACAGAAAATAATCTTGAAAGGGACCTCTTAATAGATTTACCATGAGCTTTTcgtgcagtgcagtgcaaatATTACTTTGTCATTAAACGCTACATTACAAATCCGTTATTGTACATATAGGAACAAAACTGCTATTTTTGTAGTTGACCGAAAGCCTGGTGTGCATTACGTTTCTCCTTTTTAGCCTTTATTTTAAGGTTTAATTTAGCTCTGTCTTCTGTAACTTGTTTTGCATACTATAATCACAATAACTCGCATAAATGAGCTTAACCTGAGTGCTGTGCCTTGTCCCTAAAATGTTCTTGCATATGCCATCTTGTAGTATATGAGCTTAGATTGCTCCATAGTTACAGAAACCTAACTAAACTTGACATCATTGTTCTCATTATCATTTTAGACGGGCAAAACTCCTTTCCAATATTCATCAAGTACATGCAAAGATTAGTCTCACTATTAATACTTTCTTCCACAAGTTTAATTACAAGGGAAAGGACAATGTGGTTTacctaatttgttttttgttttcttgtttttactggtgtctgtattttgtgtatcttcttcttttgtgtctctcttttaaatattaaatttattCTGAGATTTAAATTCTGAACAGTTTATAACCAGTGAGGCGTTCCTTTCTTATTTAGCGAAGAGGTGGAGATCAAActctttaaatacaattttcccAAACTGTTGAACATTTGAAACTATAGACTAAACACACTGGTAGCAGTCAAAAGGATAACACAGAAATGTGATCAAATAATAGAACTGTCTGTATGCCAGATTTTTTAACTGCTTGTTTATATAGGATGagggatttattttatatttatttctttaataatatatttatagactGAATACACTTGTTTATCTGGCATCCTAAAGATCATGGCatttgatgatttaaaaaatgggaGTTTATTAGAAACTGAGAGATTATTTCATCTTTTACCATACACTAAATTTCAGACTTATCTTTACAGCAGAAGTGATGACTAATGaattaaagaacagaaaataaacaagggAAGCAGTGCGCAGAAAAGGCAGATTTGTTGATAAAACCACGCAGGGTACTATTTCTGAAAACTGACCTTTTGAAATAGTGATGAAGGAGCTCAGATGGGGAAAATGGgagtggatttattttttgtattcattaaattaactgaatttcCTGTGATCCAAATCCTGTTGTTCAGTGTGTATAGATTTCACAGTAAAAACAGAACTGGCAGTTGTTTCGACCGTTTCGGTTTCTAGTTTAGGAGTTTAAGACATTGCTCGGTCAACTGGTCAGATTTGATTTGTGTGGGGG

Function

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002481 True 3503 mRNA 0.43 15 16568336 16582900

Neighbor

gene id symbol gene type direction distance location
AMCG00002477 NA coding downstream 413771 16129440 ~ 16154565 (-)
AMCG00002475 eomes,LOC105012780 coding downstream 523246 16038401 ~ 16045090 (-)
AMCG00002474 NA coding downstream 579301 15951233 ~ 15989035 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding downstream 618314 15942106 ~ 15950022 (-)
AMCG00002472 NA coding downstream 645209 15838879 ~ 15923127 (-)
AMCG00002487 NA coding upstream 75998 16658898 ~ 16672579 (-)
AMCG00002488 NA coding upstream 106936 16689836 ~ 16734523 (-)
AMCG00002486 NA coding upstream 169648 16752548 ~ 16753496 (-)
AMCG00002491 zdhhc3,LOC103144443 coding upstream 209656 16792556 ~ 16813272 (-)
AMCG00002490 NA coding upstream 241329 16824229 ~ 16831271 (-)
G123489 NA non-coding downstream 85285 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 88043 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 440931 16124282 ~ 16127405 (-)
G123405 NA non-coding downstream 773164 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 845199 15722933 ~ 15723137 (-)
G123524 stt3b,LOC108412618 non-coding upstream 65507 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 70599 16653499 ~ 16654863 (-)
G123637 NA non-coding upstream 397931 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 412229 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 492412 17075312 ~ 17075549 (-)
G123263 NA other downstream 1622025 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2914089 13649227 ~ 13654247 (-)
G122862 NA other downstream 3538930 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4561984 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4695474 11869607 ~ 11872862 (-)
G123585 NA other upstream 253256 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 375262 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1107108 17690008 ~ 17706289 (-)
G123829 NA other upstream 1339552 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1350564 17933464 ~ 18041573 (-)

Expression


Co-expression Network