AMCG00002489


Basic Information

Item Value
gene id AMCG00002489
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16779828 ~ 16790437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002489
CAGGGCTTGACGACTTGTTTCCTTCCCGGCAGCCATCTTGGATCCGGTCTCCGCTACGCCAACAtttggtaattaaaataatcgGTGGCTGCTCCACTAATGGAATCAGTGGTTcttcatatacattaattatatactgtgtgtgttatTGAAATGTCCCCGCACAGTGGTCCCGTTCTTCTGCTATAGTAGAACTCATTCATttacgttttttattttcataattaattccCGGATGTTGGCGTAGAGGAGAACGGATCCAAGATGGCTGCCGGGAAGACAACAGAGCACGTTTTTAGACGGAAAAGCCGTCTTTGCAAGGAGCAGACGCCATTTTGGAGAGAATATGTAACCTATACAATTAAGCTAGGTAAACATCAATCCAATCcaataaatttaaatacaagaaaaatatgttGAAGCGAAATGGAAATCCACCAGGCGGTAGTAGGAGTCGACGAAAAAGCACCCTGTTTGGCTATATGTTGTACTGGTCACCTCCCACCATGCTCCTGATTGGAATACACTCTTGGCATCTCTGAAATATGATTTGGCCGGTGTCCAAAAAGAGCAAGATAAAGGTGGTACAGATCAGCTTGCCTTCTACTGTTCTTTCACTTAAACCTCCCTGAAGTGTGCAAACATGAACCAGTCCGACTTGAAGGTTACTGGCATCGATTTCCTGAAGCAGCAGAATGAGGAGCTCCATCACACCTCTGAGTTTGTGACCCCCAGGCTGGTGGTGAGGCGAGGGCAGCCGTTCGTGGTCAGCCTGTCCCTGAGCAGAGCGCACAGCGCCGGGGACCAGCTGCACATCCACCTGTCTGTGGGCGCCCAGCCCCTGCAGTCCCAGGAGACGCTGGTGATCATTCCCGTGACGCAATCTGCAGTTGCGCAGGGCTGGAGCGCAAGAATAATCCAAACGTCCGGCCAAAAGTGTGAAGTGGAAGTGAGGACAGCCCCCAACGCTGCAGTGGGACAGTACTCCTTCAAGGTGAAGATTGGAGAAGACTACCTGTACAGCCCGGAGGACAGCAATATCTATGTGTTGTTTAACCCGTGGTGTGAAGGTGATGGGGTGTACCTGCCGGATGAGGAGGCGAGGAAGGAGTATGTTATTAATGACACTGGGTACATCTACGTTGGCTCGGCTAATGACATTACCGGGAAGCCATGGAACTTCGGCCAGTTTGAGGAGAACATGCTGGACTGCTGCCTGTTCCTCCTGGATAAGAAAGGCCTGAAGCAGGTTGCCAGGAAAGAGCCGGCGCGTGTGGCCAGGGCCATGGCTGCTGTGGTCAATGCCAATGATGAGAATGGGGTGCTGTGCGGAAACTGGTCTGGGGACTATTCAGATGGCACCCCCCCAGTCCACTGGACTGGGAGTTTGGCCATCCTGCAGGAGTACCACAAGTCAAGAAAGCCGGTCTGCTATGGCCAGTGCTGGGTGTTCTCTGGAGTCCTCACTACAGTGATGCGGTGCCTGGGAATCCCAACCAGAAGCGTGACCAACTTCTGCTCAGCCCACGACACTCAGGGCAACCTCACCATCGACATCTACCTCGACCAGCGCGGGCAGAGACTTGACATCACTACCGATTCCATCTGGAATTTCCATGTGTGGAATGATGTGTGGATGAAGAGACCGGACCTACCTGAGGGATATGATGGCTGGCAGGCACTGGATGCCACTCCACAGGAGAAGAGCGAGGGTGTCCATCAGTGCGGCCCTTCAGCTCTCAAAGCCATAAAGAATGGAGAGGTCTACCTGGCCCATGACACCAAGTTCGTTTTTGCGGAAGTCAACGCTGACAGGATCATCTGGCTGGTGAAGGACCCAGTGCGTGAGCCTGAGAAGATGATCAGGCTGAGAGAGCATCGCAGTGCTGTTGGCAAGAATATCAGCACCAAGGCCGTGGGCAAGGACATGCGCCAGGACATCACCATGGAGTACAAGTTTGCAGAGGGTACCCCTGAGGAGAGAAAAGCCGTAGAAAGAGCCCTTGCCGTCTCTCGCCCTGATGTTCCTTTCCCGACAACCCCGACTGTCCAGGTTGGCTTCGAGTCTCGGAACGCCGTCCGTCTGGGCACTCCGGTCACTCTCTGCATCTCCCTCAGCAACTCCTCTTCTCGGGACCAGACCATATCCCTCACAGCTTCCTGCCAGCTACAAACCTATGATGGCAAGAATGTGGCCACCATCAAGGTGCTGAAGCAAGAGGTGACAGTCCAGGCCAAGAGCTCTACGGCTGTGCCCATCGAGGTGGAGGCTGCCGAGTACCTGCAGCACCTGTCTGTGGTCAACGATGACCTGTTAGTGCGCGTCACCGCCGTGAGCAAGACCAAGGAATCCAGCTCCATCTCTGTGGACGACGCCACCCTTGCCTTCAAATACCCACCCATCACTGTGGATATGCCGGAAACTGCCAAGATTGGGGAGCCGTTCACTTGCACCTATACCTTTAAGAATGATATTGGTATTGCAATGGACAACTGCAAGCTGCATGTGGAAGGACTGGGCCTTTTCCGACATGAAACCTTTAACGAgggGAACATCAGAGCGGGTGGGATCTTCAGGTCAAAAGTGATCTGCACACCGACCAGAAGTGGGGAGCGGAAGATTATCGCCAAGATCACCTCCGATCAGATCAATGGGATCAATGCAGAGAAATCTATCGTGATCAGCTAAACTGCCACTGGAGAGCTGAGGCACTGAGCAGCAATAGGTACTGGACAAGGAGAAGGACAGCTTTATCTAATCATCTTTCGCTAACTTTACAGATTATATCATGGGCTTATGACAGAAATCTAAGTTTAAAGTGAGGGTAGCAGGTAAGCATGTATATCCCTACAGTACTGGTGTTAgatttcccccaaaataatagctactgttaaaaatgtgaattaatcaATCATAGCTCCCTGTAGTCTACACTAGACTGAATTAAACGTAAGTGGGATTGCTTTGGTGTCAACATACAGTAGAAGCAGATGCTTTGGGAGAAAGGAATACATAAGGTAACCAATTGGGTCAGTC

Function

GO: NA

KEGG:

id description
K05621 TGM4; transglutaminase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002489 True 3037 mRNA 0.51 15 16779828 16790437

Neighbor

gene id symbol gene type direction distance location
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding upstream 5069 16769702 ~ 16774759 (+)
AMCG00002484 NA coding upstream 10306 16754096 ~ 16769522 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding upstream 29232 16736684 ~ 16750596 (+)
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding upstream 128422 16621519 ~ 16651406 (+)
AMCG00002480 NA coding upstream 209401 16535647 ~ 16570427 (+)
AMCG00002498 exosc7,LOC107693297 coding downstream 23024 16813461 ~ 16819588 (+)
AMCG00002497 NA coding downstream 31262 16821699 ~ 16824223 (+)
AMCG00002494 lars2 coding downstream 66070 16856507 ~ 16900912 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding downstream 116308 16906745 ~ 16914952 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding downstream 134880 16925317 ~ 16933518 (+)
G123526 NA non-coding upstream 124944 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 127864 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 289876 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 984679 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 1089865 15689601 ~ 15689963 (+)
G123568 NA non-coding downstream 1663 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 301538 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 346976 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 905423 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1136262 17926699 ~ 17940633 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2418292 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3650131 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3708996 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3727857 13031759 ~ 13051971 (+)
G122746 NA other upstream 4639363 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 167724 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 185851 16976288 ~ 16985906 (+)
G123807 NA other downstream 1124999 17915436 ~ 17984730 (+)
G123989 NA other downstream 2041577 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2283256 19073693 ~ 19127947 (+)

Expression


Co-expression Network