AMCG00002490


Basic Information

Item Value
gene id AMCG00002490
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16824229 ~ 16831271 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002490
CTATAGTAATTTAGTCAGTTGGACTTGAAGCTTGCTTCGAGAAACGGAAAAAGCCAGCCTTCTGTCAAGTTATCTTTAAAGTTATCTGGTTAACTCAGCCAGCTACAAGGAATGGGGACCAAGTGACTTTTTGATTCATTGGCTTTTGTATTCTCGTACAGGACTGGCAATAATTGAGGTGAACCTGAAGCCAGAGTCCAGCGTGACTTTCATGTCGCCCAACTACCCAGAATACTTTCCTGACGATGACTACATGACCTGGAAATTCAGTGTTCCTCGCAAGAACAACGCTACTGTGCAGTTCCTGCATTACACCGAGCCCAGCTGTGTGAAGAAGGATGCGGAGGTGGAATACCACAGAACCaactcaaataataataataccctcgGGAAGAGTTTGGGAGAAGAGCAGCCATCCCACATGCAGCAGGATTTCACCATGTCTCTGAACAACTGTGAAGATGACAAGAGCAGTTCTGTTGGCTTGAGCTTAAAGTTTGAAATCATTGTGATCAAAAGCCATCTTCCAGTGCTGTCCACAGTCGATCTGGAGAAGAGCGAAGGGCTGACTATTCAGATCGACAAAACAAACCCAGCGTCAGATTGTGAGATTAAAGCTGACTCGGTCATCATGCAAAATATCACCTTACAGTCGGGGAACAAGTTCAACCTCTCTTTCCAGGACTGTATGAAGGAAGATGTCATCTTAACCATCACTAAAACCATCGAGTGCCTGACACTGAAGGGATGTCCTGTGAGTGCAATGCCTCTCGCTGTGCCCACGCTGGAGCCCTCTCTGCCCATCTCTCCACAAAGAATCACCTGGCACCTGAGGCCCCCAGAAAATGGCACGGTGGAGCTCAAGGCACAGATGGACGGCCTGCAGCAGTCACTGCCTGGGTACGAGTGCAACCAGAGCTTCTCTTACACCTTGACAGAGCCTGATGGCTCAAATATTGGCACCTTCTGTAGCAGCGGCAGCATCAACAAAGTTCAGATCCACAGCGACATGTCCATCGTCATGACGGCCAACGGGGTGATAGACCTCAGCCAGGCACAGCAGCCCATCTTTAACGTCTCCTTCACGAAAGACATCCAAGAGAGTTACATCTTCACAGTCACCCCCAAAGTTGGAGTGGTGACCCTCCTGGCCACGCCCAACTGGCCCGTGGGGATGAAGCCCTCTGCCATGGTGTCCTGGATCGTGTCGCTGCCCAGAAAAACCGAGGCTGACCTGGGCTTCCTCAACATCAGCCAGCCCAAGTGTAGCCAGGGCAACACGCAGATCACAGCGCTGTCCCAGGGCTCCGGGGAGAACCTGTTCAGCCTCAGGGAGGACGAGAGCGCTAAGTCTCAGCTGAGCATGGATGACAGCTTCTGGCTTAAGATGTCCAACTGCCAGCCCGAGTCCCAGCAGCCTGGCTTCAGTGTGCTGAGTAAAATCACCCTGCAGAAGAAGTCGAatctCCTCTTGAATATAATCCTGGGGGCTGTTGGTGCTTTGCTGTTCATTTTGCTGATTGTCTTAATTGTCGTCTGTGTTGTATTAAGaaagaagaagcagaagcagaaggaaAACCAAATGGCTATCTATAATCCCAATGTCAATACATTCTTCCCGGGGCACTCCCTGTTCCCCAAGACCAGGGCAGACAATGAGTCGCACATTTATGCTGACATAGAAGACACCATGGTGTATGGGCACCTACTGAATGAGATCGAGGGGGGCCCGCCTCAGGTGGACACGTACCGGACCTTCACCGGGCCCATGGATGACACCCCTGTGAGCAATGATGGTAAAGACAGCCGCTGTAACCCGGAGGTGGATGTCTATCGACCATTTATCAGCCTTTCTGAAGCCGCTCCGGGCGCTGCTGGAGTTCTGGGTCGGGGAAACAGCCTGGCCTATATGGACCGGCGCATGGTGGACAACGAGCTCTACACCTTCAAGAGTAACGGAGATGCCTCCCCTCTCCCACCTCCACCACTCATGGAACCGATAGCGGATACGGACAAGGAGACCGAAGAGGCAGTGTAGCACAGTTTGAGGCCTCTCTCACGGGACAGGCGTCACTGCTGGCAACCTTACAGGACTTTGGTTTTCATCACAACTGTTGGCCTGCTGCAGACGCTCGTCTTTTTGGGCCTGCTGACAATTCCCCTACCATTAGCAAACGCCTCTCTGATCCATTGTGAGAAaacgggggaaaaaaacatcatgTGAGGGTTGAATTTATTGTCCCTTCCTTGTGTATAGTATCCTGATGTTTTAATGATGGCCTTTCTTGTTCTTTGTTTCACTGCCCTTCAATGAACTAACAGGTTTCCCACCTGAATAGACCTCAGGTTGTCTATTAGTGTTGGAGATTGTTTAATGTGTAATTCACCAGAGGTTAGTTTCTAAGACTCATGTCTCTTAATGTTTGGTCAGGTGTTATGGTTCAATGAGAGAAGTTTCCCTTTTCTTACAAACATTTTTGGGGAGAGATTTTACTTGCACTAATTTTTCTCCTTTAATTCCTTTAATTTTGTACGCTTCTGAGGGATTTCTATTGTGTGCGCTGTATGAactaaaatgtgtatatgtatatatattaagcaGTTTTTAATATAAGTGAACGTGCAAAGTAAATGTTATGAAAGCACTGAGGGATCACTGTAGCCACCGCACGCAATGAGGTAATAACACTGTGTGACATTTCCAAAGCCTCTCTAAGACATGTCACTTTTACTGATAGGCACAGACAGGAGAGTTGGCGGGGGGAATACACAGTACCTTGGGTAATAACGAGACCTGGGGGGGATTATACGGATTCTCATAACATTCTCGTCAAAGCTCTTCTTTCTATGAAGGGTTGTTTGTAGGGGTTTGATGACCTTTATGGTCCCCACTAGTTCATATGAGTCATGCACCTGAacgtctgttttgtttttaggctcttttgttgtatttagGCAATGCTCCCCTAATGACATTTAACGTTCCCTGCTGCAGTTGGGATTCACTCGCCTGAGAGCTTCAGGAATCCACTCGGACTGTTAACAAAGCCAACCGGTCATTGCCTGGataaaacaaagggaaattaggtcttaaataataataacatgaaaagAATGAGAACGTTTTTGTCCGATCACTGCCAATGCAGGTAGCTGACAAGTCGCTGGCCTGACGATCTTTATAGCAGTGCCCAGGATTGAAGGGAACTCGAGGGAACAGGGAGAAGTGATGTCCTCATCTGTCAGAACAGAGTTGCCCTCATGAGTGAGTCACCTAGCAGTCCAGAACACCGCGCCTGTCCCCACTGCACCGGGGAGCCTGAGTCACCGGGACGAGAGCGAATATTGGGGTCTATTCCAAACAATCTGCAAAAAAACGCAATCGTTTTACAGTATTATAGAGATTGTGAAAAGGCAtcctgttttttagttttagttttttttatgtgaaatgtttttaatatattgaataCATCTTCAGCTGACTGCATTAGCATCTGTTTTCAGCTTCATCAGAAGTGATCATTTAATTCTACATGACTTCTCTGCCTTGTACTGTCAGTCAATCGATCGTTGGAAGATTACGTGGGATCAGGCTTTTTGAATTTTTTGGAAGCAGGTTTATTCATTCTCAGTagcctgttttatttttgttttcatttccaaataAACTGCAGTGTTCACTTggattgttttaaagaataaatgtGCTGTCAGATTGTGCACAgagtatgtattttttctcattctattcatttaaatactcttagtatgttaatgtatttatagagagttttgatattttattttgaaaatataaaataataaggaatCCATAATATGACCCTGGAAACCACTATTTTTGGTTGTCTGATTGTACATTACTTTCAGTTTCATATAGTTATTCTAGTAGTATGGTTTCATGTGAATGTTTTTGCTTGTTATAGTCAAtgaatttgacaaaataaaaatattaagatGATTGTAATTGGCGACTGGTGGGCGTGCTGAGGTTTGGTGTAAAAGCACTGGAATGTGTCGACACCCATTGCCAACCTAAAGGCTGCACCTAAATTGTGGTAGTAACTTGGTGCAATAAATTACGTAACCATAAGTAAATTGTTAGTTATATAATTCATTGGAGTAATGAAAAT

Function

GO: NA

KEGG:

id description
K06732 CDCP1, CD318; CUB domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002490 True 4154 mRNA 0.45 6 16824229 16831271

Neighbor

gene id symbol gene type direction distance location
AMCG00002491 zdhhc3,LOC103144443 coding downstream 10957 16792556 ~ 16813272 (-)
AMCG00002486 NA coding downstream 70733 16752548 ~ 16753496 (-)
AMCG00002488 NA coding downstream 89706 16689836 ~ 16734523 (-)
AMCG00002487 NA coding downstream 151650 16658898 ~ 16672579 (-)
AMCG00002481 NA coding downstream 241329 16568336 ~ 16582900 (-)
AMCG00002492 tmem158,LOC102794155 coding upstream 16153 16847424 ~ 16848116 (-)
AMCG00002505 NA coding upstream 190148 17021419 ~ 17052806 (-)
AMCG00002504 NA coding upstream 232136 17063407 ~ 17071925 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding upstream 249233 17080504 ~ 17090314 (-)
AMCG00002509 eaf1 coding upstream 261635 17092906 ~ 17097083 (-)
G123527 NA non-coding downstream 169366 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 172775 16648407 ~ 16651454 (-)
G123489 NA non-coding downstream 341178 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 343936 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 696824 16124282 ~ 16127405 (-)
G123637 NA non-coding upstream 149560 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 163858 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 244041 17075312 ~ 17075549 (-)
G123705 NA non-coding upstream 403099 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 828796 17660067 ~ 17675110 (-)
G123263 NA other downstream 1877918 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3169982 13649227 ~ 13654247 (-)
G122862 NA other downstream 3794823 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4817877 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4951367 11869607 ~ 11872862 (-)
G123585 NA other upstream 4885 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 126891 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 858737 17690008 ~ 17706289 (-)
G123829 NA other upstream 1091181 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1102193 17933464 ~ 18041573 (-)

Expression


Co-expression Network