AMCG00002502


Basic Information

Item Value
gene id AMCG00002502
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16987102 ~ 16992955 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002502
ATGGCCACGGAGCCCGGCCGTGCCTCTGCGCAGAGCTGCCGTGTTGCGGGGCAGCTGCTCGCCTCTGCGCAGACCTGCCGGCTGCTCACCCGCCACCGGGAGCTGCTGGTCACGCACGTCAGGAACACGCAGTGCGTGCTGGACAATCTAGTGCGCAGCGAGTTCTTCTGCGCGGAGGATGAGGAGATTATCTTGCGCTTTCCCACCAGGACAGACCAGGTGCGTAAAATCCTGGAGCTGGTACAGAGCAAAGGGGAAGAGGTAGCGGAGTATTTTGTGCACATTCTGCACGAGGCCTATGATGCCTACATCGACCTGAGGCCCTGGTTCAAAGAGATCCAGTATGAGCCCTCCGACTGTGTCCGGAAAATACCCGTCATCAACACCGACCCAGTAAGTAGGTATTGCGAGAAGCTACACCATGATCTGGGACGGGACACCAAGTTCATAATCTCCTACGCCCAGAGAGAGGAGACCCTGCTGGAGGAGATGTACACAGATACTCTGATGGAGCTGCTGAATGACCGCAACGAGAGCCTGGGCTACCTGGACAGCTTAGATGAGCTCTTCAGCGACCGTGGAGTCTTTAACCAGCACGCTGAGACCCTGTTCATTATGGGGGATGCTGGTGTTGGGAAGTCCATCCTGCTGCAGAAGCTGCAGAACTTGTGGTCCTTTAGGGAGATATGTGTCCAGTCCAAGTTCTTCTTCAAATTCCGCTGCCGGATGTTCAGTGCCTTCAAGGAGACTGACGAGATCTCCCTGAAGGATCTTCTCTTCAAGTACAACTGCTACCCAGACAAGGACCCTGATAATGAGGTCTTCAGGTACATACAGCACTACCCAGAGACTGTGCTCTTTACTTTCGATGGTTTTGATGAGATTCATGCCGATTTTGACCTGAGGAACATTCCAGAGGTCTGCTCTCCTGAAGAGAAGACCCACCCACTGTTGCTTCTCATGAATCTACTCAGTGGGAAACTGCTGCCAGGCTCCAAGAAAGTCCTGACTGCACGCACGGGCACTGACATCCAGAACAAGGTAGTCAGGAAGAAGGTTCATCTCAAGGGCTTTTCCCCAGAGTGCCTGCGGAGGTACACTGCTCTGCACTTCAAGGACAGGGATTACCAGGCTTTGGTGAACAACCAGCTGAATGCCAACCCTCATCTCTGCAGCTTGTGCTCCATCCCCTTGTTCTGCTGGATCATCTTCAAAAGCTTCAAACACTTCCAGACAGTTTACGATGACTTTGAGTTGCCTGACTTGTATGTCACCCTCACCAATGTCTTCATGCTGATGGTTGAGGTATTTCTCAGTCGCTCCTCCAAGCCTGGTTTGCTAAAGAGGAGTACCAGGTGCCAGTTGGAGACTTTCAAAGCCGGCAAGGAAACTCTGATTGCCTTTGGGCGGCTAGCTCATCTCGGGATGGAGAAGACCGGCTTTGTGTTCAACCAGGATGAGATTTCCTCTTGCAACATCGAGGAGAAGGATCTACAGCTGGGCTTCCTCAGGCCCGTCTGCCAGTACGATGGCTGTGGGACCCTGTCCACCTTTGACTTCCTCCATCTAACTCTCCAGTCTTTCTTTGCTGCCTTGCTGCTGGTATTGGACGAAAGCATTGGCCCTGCTGGGATTCTGAAGTTCTTTTCAGAGTGCGACTATAAAAGCGCAAACCATTTTCCTTGTCCCTGTCTTGGAGGCTCCAAACCACGTGGCAAGGACCCTTTCCAGGAAAATGAGCACTTGCAGTTCACTAACTTGTTCTTGTGTGGACTTCTGTCCAAGTCCAACGTCAACCTACTGGAGCACCTGGTCCCCCCCACATCACTGAAGAAGAAACGAGAACTTCTCAAGTCTTACCTGTCAGACAGTGTCAAGTCTCACTTGAAAAGCCTACCTCGGGTCAAGTGTGAGCAAGAAGGAAACAAAGTCCATGTGATGCCTAATTTTATTTGGATGTTGAGGTGTATTTTTGAGACTCAGAGCGAGGAAATCGCGAAGGTCGCTGCCAGAGGGATCTCGGCTGATTATCTCAAACTGACTTTCTGCAATGTCTTCTCGGCCGACTGCAGTGCAATTAACTTTGTATTGCTTCATCACCAGAAAAACATTGCTCTGGATttggacaacaacaacatcaatgaCTATGGCGTGAAGGAGCTTAAGCCATGTTTCCATAAACTGACTGTAATAAGATTTTCTGTCAATCAGCTCACAGATACCAGTATGGAAATTCTAGCAGAAGAATTATTGAGGTACAAAGTCATCAAAGTGCTGGGACTTTATAAGAATCAGATAACGGATGTTGGAGCCAAACTGGTGGCGCATATCATTGAAGAGTGCCCCAGTCTCAGAATTGTTAAAATTGGGTGCAACAAGATTACGAGTGAAGGTGGGAAATATCTGGCTGGTGCAATTCAGAAGAGTAGAACCATCTTTGATGTCGGAATGTGGGGAAATACTATTGGGAACGAAGGAGCCAAAGCCTTTGCCGAAGCCTTGAAGAATCACCCCAGCCTCACAAACCTCAGCCTGTCATTAAATGGGATCtccacagagggagggagaagccTGGCTGCTGCCCTGAAAGAAAACACGTCTGTCCATATCTTTTGGCTGGTTCAGAATGAGTTTAATGACGAAGTTGCAAACTGCTTTGCTGAAACTGTCAAGGTCAACTCTGGTTTAACCCACTTGTGGTTAATTGAGAATAAAATAACCGCTAAGGGGGCAAGGATGCTGGCGGATGCGCTGCCTCAGAACAAATCACTGAAAGAGATC

Function

GO: NA

KEGG:

id description
K08727 NOD1, CARD4; nucleotide-binding oligomerization domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002502 True 2781 mRNA 0.50 10 16987102 16992955

Neighbor

gene id symbol gene type direction distance location
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 30532 16937361 ~ 16956570 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding upstream 53584 16925317 ~ 16933518 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding upstream 72150 16906745 ~ 16914952 (+)
AMCG00002494 lars2 coding upstream 86190 16856507 ~ 16900912 (+)
AMCG00002497 NA coding upstream 162879 16821699 ~ 16824223 (+)
AMCG00002501 NA coding downstream 10093 17003048 ~ 17016246 (+)
AMCG00002507 NA coding downstream 102781 17095736 ~ 17102119 (+)
AMCG00002506 sh3bp5 coding downstream 114444 17107399 ~ 17136520 (+)
AMCG00002513 NA coding downstream 211508 17204463 ~ 17248752 (+)
AMCG00002512 NA coding downstream 277626 17270581 ~ 17272452 (+)
G123568 NA non-coding upstream 194303 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 332218 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 335138 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 497150 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1191953 15794408 ~ 15795149 (+)
G123653 NA non-coding downstream 99020 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 144458 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 702905 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 933744 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 1058057 18051012 ~ 18052338 (+)
AMCG00002496 NA other upstream 1196 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 27020 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2625566 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3857405 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3916270 13044693 ~ 13070832 (+)
G123807 NA other downstream 922481 17915436 ~ 17984730 (+)
G123989 NA other downstream 1839059 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2080738 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 2137112 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 3248893 20241848 ~ 20333030 (+)

Expression


Co-expression Network